PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.1968s0008.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family NAC
Protein Properties Length: 164aa    MW: 18973.8 Da    PI: 9.9384
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.1968s0008.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM81.51.7e-2571355128
                  NAM   5 frFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrdkkyatgkrknra......tksgyWka 85 
                          ++F P+d  lv++yL++++++ k     +ik++++y++ePw Lp+ v++   +ekew++F+kr  k+  gk +nr+         g+W +
  Cagra.1968s0008.1.p   7 LKFFPSDMTLVDQYLRRRIDTGKE---GFIKDIKLYEYEPWLLPH-VNNdlfGEKEWFYFVKRTLKA--GKTPNRKvlgrggSIVGTWTT 90 
                          79*******************994...56***************4.333356899*******99886..667888534444433799*** PP

                  NAM  86 tgkdkevlskkgelvglkktLvfykg..rapkgektdWvmheyrl 128
                          +g+++++l +++ ++g k  L +yk    + kg +t W+m ey l
  Cagra.1968s0008.1.p  91 SGSKEAILGRNKVVIGHKAELSYYKDvkGQVKGDSTGWCMTEYWL 135
                          ************************643378899**********87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100530.9213153IPR003441NAC domain
PfamPF023651.2E-146134IPR003441NAC domain
SuperFamilySSF1019416.41E-296153IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
MADPRDLKFF PSDMTLVDQY LRRRIDTGKE GFIKDIKLYE YEPWLLPHVN NDLFGEKEWF  60
YFVKRTLKAG KTPNRKVLGR GGSIVGTWTT SGSKEAILGR NKVVIGHKAE LSYYKDVKGQ  120
VKGDSTGWCM TEYWLASKND EFQELVLCYI RGKKKQVKNV SSYS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-15115815170NO APICAL MERISTEM PROTEIN
1ut4_B2e-15115815170NO APICAL MERISTEM PROTEIN
1ut7_A2e-15115815170NO APICAL MERISTEM PROTEIN
1ut7_B2e-15115815170NO APICAL MERISTEM PROTEIN
3swm_A3e-15115818173NAC domain-containing protein 19
3swm_B3e-15115818173NAC domain-containing protein 19
3swm_C3e-15115818173NAC domain-containing protein 19
3swm_D3e-15115818173NAC domain-containing protein 19
3swp_A3e-15115818173NAC domain-containing protein 19
3swp_B3e-15115818173NAC domain-containing protein 19
3swp_C3e-15115818173NAC domain-containing protein 19
3swp_D3e-15115818173NAC domain-containing protein 19
4dul_A2e-15115815170NAC domain-containing protein 19
4dul_B2e-15115815170NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.1968s0008.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006303744.21e-117NAC domain-containing protein 19
TrEMBLR0GL051e-107R0GL05_9BRAS; Uncharacterized protein (Fragment)
STRINGCagra.1968s0008.1.p1e-119(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM145441119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03490.15e-24NAC domain containing protein 6