PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.1968s0044.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family NAC
Protein Properties Length: 230aa    MW: 26314.2 Da    PI: 6.1192
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.1968s0044.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM95.11.1e-2951366127
                  NAM   6 rFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeek.ewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                           F+P +eel+++yL++k+++k+    + i+ev+i+++eP dLp  +k e++  wyf s+ +k   + +r++ra +sg Wk tg++++v++
  Cagra.1968s0044.1.p   5 TFNPPEEELINYYLNNKITEKDDLDGKQINEVNICHYEPADLPGLAKIESShTWYFISPVEK-FGRLNRTKRASRSGHWKITGNSRTVKD 93 
                          7******************999544477***************6444444426777777665.56789********************** PP

                  NAM  95 kkgelvglkktLvfy..........kgrapkgektdWvmheyr 127
                           +g+ +glkk Lvf           + ++ + +k++W++he++
  Cagra.1968s0044.1.p  94 VDGNPIGLKKFLVFQenkrsstwssSTTNTQQHKANWIIHEFH 136
                          ***************766666555435666778*********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100529.6431166IPR003441NAC domain
PfamPF023658.3E-184136IPR003441NAC domain
SuperFamilySSF1019411.03E-316151IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MVRCTFNPPE EELINYYLNN KITEKDDLDG KQINEVNICH YEPADLPGLA KIESSHTWYF  60
ISPVEKFGRL NRTKRASRSG HWKITGNSRT VKDVDGNPIG LKKFLVFQEN KRSSTWSSST  120
TNTQQHKANW IIHEFHSFLH HPNQVMMGNK NIVEDNGGDY CNDLEELLPE FHTTNWFDYS  180
QFDHFLEGSF INITQPIILE GGESSGLPSG ENGHVYGPNT RENSNVRQL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.1968s0044.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankATAC0222871e-103AC022287.9 Arabidopsis thaliana chromosome III BAC T27C4 genomic sequence, complete sequence.
GenBankCP0026861e-103CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023632870.11e-152NAC domain-containing protein 1
TrEMBLR0GLB41e-122R0GLB4_9BRAS; Uncharacterized protein
STRINGCagra.1968s0044.1.p1e-171(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM148151520
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04430.11e-92NAC domain containing protein 49