PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cagra.1968s0046.1.p

Organism

Capsella grandiflora

Taxonomic ID

264402

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

NAC

Protein Properties

Length: 309aa MW: 35127.2 Da PI: 4.5663

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cagra.1968s0046.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	27.9	6.8e-09	34	65	97	128
NAM 97 gelvglkktLvfykgrapkgektdWvmheyrl 128 + ++g k++Lvf kgr ++ +k+dWvmhe++ Cagra.1968s0046.1.p 34 QGKIGHKRVLVFLKGRGSQQTKSDWVMHEFHY 65 5679**************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	14.717	1	85	IPR003441	NAC domain
SuperFamily	SSF101941	1.57E-11	26	85	IPR003441	NAC domain
Pfam	PF02365	1.2E-4	27	64	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 309 aa Download sequence Send to blast
MGYDRTGERL LGSGNLPESL LMSMISGGFW TGAQGKIGHK RVLVFLKGRG SQQTKSDWVM 60 HEFHYDYDLL PEHERTYVIC RLEYKGRDTK FLFDCPTDPT PTFVPNPTNS EGSVVDRSFE 120 EYLGSFYNIS EFDSENQGHQ LGNFNMQQQV PYLEDSYVDD PQRIWDYPIS EIMSITQVYP 180 SNHCPKTPLT GVLADDSCDS DTDSMTCRDT SSSTDSDGSS NESDHTLTDD DISSLNTFEP 240 LHNYEARGMP KQPVLHLQVK QKVFTNTVKH NWIVLEEMTQ TNSKWNYLKN MIIGFLLLIS 300 IIGWIIVV*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP). {ECO:0000250\|UniProtKB:Q949N0}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cagra.1968s0046.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cold, drought stress and methyl methanesulfonate (MMS) treatment. {ECO:0000269\|PubMed:17158162}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC007323	3e-43	AC007323.5 Genomic sequence for Arabidopsis thaliana BAC T25K16 from chromosome I, complete sequence.
GenBank	AF196566	3e-43	AF196566.1 Arabidopsis thaliana chromosome I, partial sequence.
GenBank	CP002684	3e-43	CP002684.1 Arabidopsis thaliana chromosome 1 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006305085.1	0.0	NAC domain-containing protein 1
Swissprot	Q0WV96	5e-79	NAC1_ARATH; NAC domain-containing protein 1
TrEMBL	R0ILS3	0.0	R0ILS3_9BRAS; Uncharacterized protein
STRING	Cagra.1968s0046.1.p	0.0	(Capsella grandiflora)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7658	16	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01010.1	6e-62	NAC domain containing protein 1

Link Out ? help Back to Top
Phytozome	Cagra.1968s0046.1.p

Publications ? help Back to Top
Davuluri RV, et al. AGRIS: Arabidopsis gene regulatory information server, an information resource of Arabidopsis cis-regulatory elements and transcription factors. BMC Bioinformatics, 2003. 4: p. 25 [PMID:12820902] Palaniswamy SK, et al. AGRIS and AtRegNet. a platform to link cis-regulatory elements and transcription factors into regulatory networks. Plant Physiol., 2006. 140(3): p. 818-29 [PMID:16524982] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Liang M, et al. Subcellular Distribution of NTL Transcription Factors in Arabidopsis thaliana. Traffic, 2015. 16(10): p. 1062-74 [PMID:26201836]