PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.1968s0069.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family ERF
Protein Properties Length: 197aa    MW: 21547.4 Da    PI: 4.9284
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.1968s0069.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.47.4e-184393155
                  AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         + y+GVr ++ +g+Wv+eIr+p++   + r++lg+f  +e+Aaka++ a+ +l+g
  Cagra.1968s0069.1.p 43 PVYHGVRKRR-WGKWVSEIREPRK---KSRIWLGSFPVPEMAAKAYDVAAFCLKG 93
                         68*****887.**********843...6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.1E-124393IPR001471AP2/ERF domain
SMARTSM003801.2E-3344107IPR001471AP2/ERF domain
PROSITE profilePS5103222.90644101IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-3044102IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-2144103IPR016177DNA-binding domain
CDDcd000182.27E-3045102No hitNo description
PRINTSPR003676.0E-124556IPR001471AP2/ERF domain
PRINTSPR003676.0E-1283103IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MSQQRMKLSP PPPLANNEPT ATASAVKSCG VGGRETSSTT RHPVYHGVRK RRWGKWVSEI  60
REPRKKSRIW LGSFPVPEMA AKAYDVAAFC LKGRKAQLNF PDEIDDLPRP STCTARDIQV  120
AAAKAANAVK IIEMGDDEVA EIDDVGGGDD FWEGIELPEL MMTSGGGWSP EPFVTGEDAT  180
WLVDGDLYQY QFMACL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1632105476Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00120DAPTransfer from AT1G01250Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.1968s0069.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006305645.11e-145ethylene-responsive transcription factor ERF023
SwissprotQ1ECI21e-115ERF23_ARATH; Ethylene-responsive transcription factor ERF023
TrEMBLR0IN741e-144R0IN74_9BRAS; Uncharacterized protein
STRINGCagra.1968s0069.1.p1e-144(Capsella grandiflora)
STRINGXP_006305645.11e-144(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM76592439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01250.11e-116ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]