PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.20277s0001.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family WRKY
Protein Properties Length: 154aa    MW: 17660.2 Da    PI: 8.8181
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.20277s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY60.43.4e-19107152244
                           --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSS CS
                  WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaed 44 
                           dDg++WrKYGqK++k+s + r YYrCt+a   +C+++k+v++ +++
  Cagra.20277s0001.1.p 107 DDGFTWRKYGQKPIKDSLHQRCYYRCTYAkdrNCNATKRVQKIQDN 152
                           8***************************99999*********9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081116.272101154IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.9E-18102153IPR003657WRKY domain
SuperFamilySSF1182904.58E-18104153IPR003657WRKY domain
SMARTSM007742.8E-19106154IPR003657WRKY domain
PfamPF031061.2E-17107151IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    Send to blast
MFSRIDHKAV EALLHGQGCA NNLKMLLENR EIGLVSTEPL LNSILDSFSL VLSSFQNMGG  60
HLSERSSKNM QVSFIFLMNP HIQHCRKICG AEGIESYRDE SPTPRPDDGF TWRKYGQKPI  120
KDSLHQRCYY RCTYAKDRNC NATKRVQKIQ DNPP
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.20277s0001.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006301442.12e-92probable WRKY transcription factor 64
SwissprotQ93WV71e-63WRK67_ARATH; Probable WRKY transcription factor 67
TrEMBLR0I8A65e-91R0I8A6_9BRAS; Uncharacterized protein
STRINGCagra.20277s0001.1.p1e-114(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56091847
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66550.15e-66WRKY DNA-binding protein 67