PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.20893s0010.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family bHLH
Protein Properties Length: 406aa    MW: 43578.4 Da    PI: 6.9965
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.20893s0010.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH49.11e-15219264555
                           HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           hn+ Er+RRd+iN+++ +L++l+P++      K +Ka++L +++eY+k+Lq
  Cagra.20893s0010.1.p 219 HNQSERKRRDKINQRMKTLQKLVPNS-----SKTDKASMLDEVIEYLKQLQ 264
                           9************************8.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.01E-18212276IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.815214263IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.04E-17219268No hitNo description
Gene3DG3DSA:4.10.280.107.3E-18219273IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.6E-13219264IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.4E-18220269IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0009506Cellular Componentplasmodesma
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MSQCVPDCHI DDTPVAAVAA TTVRSTTAAD IPMLDYEVAE LTWENGQLGL HGLGPPRVTA  60
SSTKYSTGAG GTLESIVDQA TRLPNPKPTD ELVPWFHHRS SSAAMAMDAL VPCSNLQEQQ  120
SKHGGVGSTR VGSCSDGRTM AGVKRARVAP EWSGSGSQRL TMDTYDVGLT STSMGSPDNT  180
IDDHDSVCHS RPQMEEEEEK KGGGKSSVST KRSRAAAIHN QSERKRRDKI NQRMKTLQKL  240
VPNSSKTDKA SMLDEVIEYL KQLQAQVSMM SRMNMPSMML PMALQQQQQL QMSLMSNPMG  300
LGIGMGMPGL GLLDLNSMNR AAAAAAAAAT APSIHANMMP NPFAAMTSPS WEASSNDTRF  360
QSPLIPDPMA AFLACSSQPT TMEAYSRMAA LYQQMQQQLP PSNPK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1222227ERKRRD
2223228RKRRDK
Functional Description ? help Back to Top
Source Description
UniProtRequired during the fertilization of ovules by pollen. {ECO:0000269|PubMed:15634699}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00034PBMTransfer from AT4G00050Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.20893s0010.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4885610.0AF488561.1 Arabidopsis thaliana clone bHLH016 putative bHLH transcription factor mRNA, complete cds.
GenBankAK1172290.0AK117229.1 Arabidopsis thaliana At4g00050 mRNA for putative bHLH transcription factor (bHLH016), complete cds, clone: RAFL16-78-C08.
GenBankBT0259710.0BT025971.1 Arabidopsis thaliana At4g00050 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023635805.10.0transcription factor UNE10
SwissprotQ8GZ380.0UNE10_ARATH; Transcription factor UNE10
TrEMBLD7M5T40.0D7M5T4_ARALL; Uncharacterized protein
STRINGCagra.20893s0010.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM39192451
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.10.0bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]