PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.21079s0001.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family MIKC_MADS
Protein Properties Length: 251aa    MW: 28612.2 Da    PI: 9.3974
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.21079s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF97.65.2e-312574150
                          S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
                SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                          krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva++ifs++g+lyey+
  Cagra.21079s0001.1.p 25 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVIFSTRGRLYEYA 74
                          79***********************************************8 PP
2K-box114.31.2e-37961897100
                 K-box   7 ksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 
                            s++ea+++++qqe++kL+++i+ +q+ +Rh++Ge+L+sL++keL++Le +Lek+++++RskKne+l+++ie++qk+e +lq++n++Lr
  Cagra.21079s0001.1.p  96 PSVTEANTQYYQQEASKLRRQIRDIQNLNRHIVGESLGSLNFKELKNLEGRLEKGISRVRSKKNEMLVAEIEYMQKREMDLQHDNMYLR 184
                           45899************************************************************************************ PP

                 K-box  96 kklee 100
                           +k++e
  Cagra.21079s0001.1.p 185 AKIAE 189
                           **986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006633.3051777IPR002100Transcription factor, MADS-box
SMARTSM004321.2E-391776IPR002100Transcription factor, MADS-box
CDDcd002654.36E-441891No hitNo description
SuperFamilySSF554552.09E-321890IPR002100Transcription factor, MADS-box
PROSITE patternPS0035001973IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-321939IPR002100Transcription factor, MADS-box
PfamPF003193.4E-262673IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-323954IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-325475IPR002100Transcription factor, MADS-box
PfamPF014869.4E-27101187IPR002487Transcription factor, K-box
PROSITE profilePS5129714.961103193IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MEEGGSSHEA DSSKKIVGRG KIEIKRIENT TNRQVTFCKR RNGLLKKAYE LSVLCDAEVA  60
LVIFSTRGRL YEYANNSVRG TIERYKKACS DAVNPPSVTE ANTQYYQQEA SKLRRQIRDI  120
QNLNRHIVGE SLGSLNFKEL KNLEGRLEKG ISRVRSKKNE MLVAEIEYMQ KREMDLQHDN  180
MYLRAKIAEG ARLNPSQQES SVIQGTTVYE SGVSTHHDQS HHYNRNYIPV NLLEPNQQFS  240
AQDQPPLQLV *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1egw_A6e-201885168MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_B6e-201885168MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_C6e-201885168MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_D6e-201885168MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1tqe_P6e-201785169Myocyte-specific enhancer factor 2B
1tqe_Q6e-201785169Myocyte-specific enhancer factor 2B
1tqe_R6e-201785169Myocyte-specific enhancer factor 2B
1tqe_S6e-201785169Myocyte-specific enhancer factor 2B
3p57_A7e-201885168Myocyte-specific enhancer factor 2A
3p57_B7e-201885168Myocyte-specific enhancer factor 2A
3p57_C7e-201885168Myocyte-specific enhancer factor 2A
3p57_D7e-201885168Myocyte-specific enhancer factor 2A
3p57_I7e-201885168Myocyte-specific enhancer factor 2A
3p57_J7e-201885168Myocyte-specific enhancer factor 2A
6c9l_A6e-201785169Myocyte-specific enhancer factor 2B
6c9l_B6e-201785169Myocyte-specific enhancer factor 2B
6c9l_C6e-201785169Myocyte-specific enhancer factor 2B
6c9l_D6e-201785169Myocyte-specific enhancer factor 2B
6c9l_E6e-201785169Myocyte-specific enhancer factor 2B
6c9l_F6e-201785169Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Interacts genetically with TT16/AGL32 in a partially antagonistic manner during flower development. Is essential for the coordination of cell divisions in ovule, seed coat development and endosperm formation (PubMed:27776173). {ECO:0000269|PubMed:27776173}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00093SELEXTransfer from AT3G58780Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.21079s0001.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU5517700.0EU551770.1 Capsella bursa-pastoris SHATTERPROOF1a-like protein (SHP1a) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023637931.10.0agamous-like MADS-box protein AGL1
SwissprotP293811e-174AGL1_ARATH; Agamous-like MADS-box protein AGL1
TrEMBLC1IDX20.0C1IDX2_CAPBU; SHATTERPROOF1a-like protein
STRINGCagra.21079s0001.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33412350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58780.11e-176MIKC_MADS family protein
Publications ? help Back to Top
  1. Matalon O, et al.
    Dephosphorylation of the adaptor LAT and phospholipase C-γ by SHP-1 inhibits natural killer cell cytotoxicity.
    Sci Signal, 2016. 9(429): p. ra54
    [PMID:27221712]
  2. Ehlers K, et al.
    The MADS Box Genes ABS, SHP1, and SHP2 Are Essential for the Coordination of Cell Divisions in Ovule and Seed Coat Development and for Endosperm Formation in Arabidopsis thaliana.
    PLoS ONE, 2016. 11(10): p. e0165075
    [PMID:27776173]