PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.2117s0038.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family B3
Protein Properties Length: 235aa    MW: 27087.3 Da    PI: 9.4313
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.2117s0038.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3110.29.4e-3545152199
                          EEEE-..-HHHHTT-EE--HHH.HTT.........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 
                          f+k ltpsdv+k++rlv+pk++ae++         ++++e+++ l++ede+g+sW+++++y+++s++yvltkGW++Fvk+++L+ gD+v 
  Cagra.2117s0038.1.p  45 FEKSLTPSDVGKLNRLVIPKQHAEKYfplnavadnSSSSEKGMLLSFEDETGKSWRFRYSYWNSSQSYVLTKGWSRFVKDKQLDPGDVVF 134
                          99*******************************99777889************************************************* PP

                          EEE-SSSEE..EEEEE-S CS
                   B3  82 Fkldgrsefelvvkvfrk 99 
                          F++++++ ++l+++++r+
  Cagra.2117s0038.1.p 135 FQRHRSDLRRLFIGWRRR 152
                          **988799999****997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.2E-4141160IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.27E-3143152IPR015300DNA-binding pseudobarrel domain
CDDcd100171.01E-2744143No hitNo description
PfamPF023629.5E-3245152IPR003340B3 DNA binding domain
PROSITE profilePS5086314.55145153IPR003340B3 DNA binding domain
SMARTSM010194.1E-2745153IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010073Biological Processmeristem maintenance
GO:0010358Biological Processleaf shaping
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MSVNHYSTDH HHTLLWQQQH HTTDASETAT TTAAWLNDDL KESLFEKSLT PSDVGKLNRL  60
VIPKQHAEKY FPLNAVADNS SSSEKGMLLS FEDETGKSWR FRYSYWNSSQ SYVLTKGWSR  120
FVKDKQLDPG DVVFFQRHRS DLRRLFIGWR RRGQASSSAV NTSSMAAPSY RQIHHSSTNY  180
SNPPSHSEYS HYGPMKIQKI YLLVDLKLTD LRSMVQWLCK WERDPQPCAI TTSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A7e-52411524113B3 domain-containing transcription factor NGA1
5os9_B7e-52411524113B3 domain-containing transcription factor NGA1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.2117s0038.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0067001e-91AB006700.2 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MHF15.
GenBankCP0026881e-91CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006288431.11e-141B3 domain-containing protein At5g06250
SwissprotQ9FNI31e-108Y5625_ARATH; B3 domain-containing protein At5g06250
TrEMBLR0HCB81e-140R0HCB8_9BRAS; Uncharacterized protein
STRINGCagra.2117s0038.1.p1e-175(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM122028100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06250.22e-96B3 family protein