PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.2117s0055.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family C2H2
Protein Properties Length: 227aa    MW: 25202.4 Da    PI: 8.7459
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.2117s0055.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.31.3e-055173123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         y+C+ Cg+ F++   L  H+++H
  Cagra.2117s0055.1.p 51 YSCSFCGREFKSAQALGGHMNVH 73
                         99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.1E-64877No hitNo description
Gene3DG3DSA:3.30.160.602.3E-44975IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139123.4E-65174IPR007087Zinc finger, C2H2
PROSITE profilePS5015712.1545178IPR007087Zinc finger, C2H2
SMARTSM003550.00175173IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805373IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0048441Biological Processpetal development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MERGECLMSM KLRPVVTKPS SDALSFWPFG EERAVEEYGG GGGCMWPPRS YSCSFCGREF  60
KSAQALGGHM NVHRRDRARL KQQSLSPSST DQATPPEYDR HQQQPQQVLD AGSKVLVQEE  120
SRKPNGTKRE ISTVCNNNVL ENPTKRFEHD NGEVKTDLSV GLLSSEFGPR KKQLFNGSSS  180
SWKRAKTDVS RFPMMLGLVI GVSKINGHHD ELDLELRLGA DPPKVN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A3e-124673229superman protein
2l1o_A3e-124673229Transcriptional regulator SUPERMAN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator essential for petal development. Required for the early development of the organ primordia of the second whorl. Acts downstream of AP1 and PTL. {ECO:0000269|PubMed:14681191}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.2117s0055.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB1073710.0AB107371.1 Arabidopsis thaliana RBE mRNA for one finger-type zinc finger protein for RABBIT EARS, complete cds.
GenBankAP0020300.0AP002030.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K16F4.
GenBankAY0888610.0AY088861.1 Arabidopsis thaliana clone 97505 mRNA, complete sequence.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006289430.11e-165probable transcriptional regulator RABBIT EARS
SwissprotQ9LHS91e-145RBE_ARATH; Probable transcriptional regulator RABBIT EARS
TrEMBLR0HEW61e-164R0HEW6_9BRAS; Uncharacterized protein
STRINGCagra.2117s0055.1.p1e-169(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM51282544
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06070.11e-148C2H2 family protein
Publications ? help Back to Top
  1. Li J, et al.
    RABBIT EARS regulates the transcription of TCP4 during petal development in Arabidopsis.
    J. Exp. Bot., 2016. 67(22): p. 6473-6480
    [PMID:27838638]