PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cagra.21284s0001.1.p

Organism

Capsella grandiflora

Taxonomic ID

264402

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

SRS

Protein Properties

Length: 192aa MW: 20563.7 Da PI: 7.8942

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cagra.21284s0001.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	171.1	5.8e-53	1	126	28	154
DUF702 28 CksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaeskkeletsslPeevsseavfr 116 Cksrg++C+thvkstWvpaakrrerqqql++ ++ +++++ e+ +kr+re+ +++++l +t+++ +++ le+ s+P+evss+avfr Cagra.21284s0001.1.p 1 CKSRGLECSTHVKSTWVPAAKRRERQQQLTSGQEPQTQAQGESVPKRQREHFPARSNSLVCTRVAAINTS-GLEIGSFPPEVSSPAVFR 88 *************************************************************9988755.99************ PP DUF702 117 cvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 cvrvss+dd+eee+aY+tavsigGhvfkGiLydqG++e Cagra.21284s0001.1.p 89 CVRVSSIDDEEEEYAYKTAVSIGGHVFKGILYDQGPAE 126 *********************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	5.0E-47	1	125	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01624	3.6E-27	77	124	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 192 aa Download sequence Send to blast
CKSRGLECST HVKSTWVPAA KRRERQQQLT SGQEPQTQAQ GESVPKRQRE HFPARSNSLV 60 CTRVAAINTS GLEIGSFPPE VSSPAVFRCV RVSSIDDEEE EYAYKTAVSI GGHVFKGILY 120 DQGPAERSSS GGGSQPLNLI TAASSSSPNV SCNNGVVGST SDHYIEPASL NYPTPINTFM 180 TGTHFFSNPR S*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Suppressor of the gibberellin (GA) signal transduction. {ECO:0000269\|PubMed:10368174, ECO:0000269\|PubMed:11706176, ECO:0000269\|PubMed:16740146}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cagra.21284s0001.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006280764.1	1e-137	protein SHORT INTERNODES
Swissprot	Q9XGX0	1e-111	SHI_ARATH; Protein SHORT INTERNODES
TrEMBL	R0EWR7	1e-136	R0EWR7_9BRAS; Uncharacterized protein
STRING	Cagra.21284s0001.1.p	1e-139	(Capsella grandiflora)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3419	28	64

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66350.1	1e-113	Lateral root primordium (LRP) protein-related

Link Out ? help Back to Top
Phytozome	Cagra.21284s0001.1.p

Publications ? help Back to Top
Islam MA, et al. Overexpression of the AtSHI gene in poinsettia, Euphorbia pulcherrima, results in compact plants. PLoS ONE, 2013. 8(1): p. e53377 [PMID:23308204] Pfannebecker KC,Lange M,Rupp O,Becker A An Evolutionary Framework for Carpel Developmental Control Genes. Mol. Biol. Evol., 2017. 34(2): p. 330-348 [PMID:28049761] Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]