PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cagra.2192s0006.1.p

Organism

Capsella grandiflora

Taxonomic ID

264402

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

NAC

Protein Properties

Length: 246aa MW: 27561.8 Da PI: 8.6766

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cagra.2192s0006.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	129.6	2.4e-40	19	150	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 lp+GfrF Pt+ el+++yL+ ++ g + ++++ i+ +d+++veP +Lp+ +++++ ++w fF++r++++a+g r++r+t+sgyWkat Cagra.2192s0006.1.p 19 LPVGFRFYPTEVELLTFYLRIQLGGGSATIHSLIPILDVFSVEPTQLPNlageRCRGDAEQWLFFVPRQEREARGGRPSRTTRSGYWKAT 108 79**************************999**********9656766667888************************** PP NAM 87 gkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 g+ +v+s +++++g+kkt+vfy+g+ap+g+kt+W m+ey++ Cagra.2192s0006.1.p 109 GSPGPVFSPDNRVIGVKKTMVFYTGKAPTGRKTKWKMNEYKA 150 **************************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	6.8E-42	16	155	IPR003441	NAC domain
PROSITE profile	PS51005	43.345	19	171	IPR003441	NAC domain
Pfam	PF02365	5.7E-20	20	149	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010200	Biological Process	response to chitin
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 246 aa Download sequence Send to blast
MCQLQQHTNE MGEDHHHELP VGFRFYPTEV ELLTFYLRIQ LGGGSATIHS LIPILDVFSV 60 EPTQLPNLAG ERCRGDAEQW LFFVPRQERE ARGGRPSRTT RSGYWKATGS PGPVFSPDNR 120 VIGVKKTMVF YTGKAPTGRK TKWKMNEYKA VDETTSVSTN PKSGISRAFD RRPTETYGIE 180 RRVPSNRVES SSRATTSTSL ETSHSGGNKV DLSVNNANTS ITQSISEMVD GLSQPFWEWE 240 QMNWS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-29	19	152	17	144	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-29	19	152	17	144	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-29	19	152	17	144	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-29	19	152	17	144	NO APICAL MERISTEM PROTEIN
3swm_A	1e-29	19	152	20	147	NAC domain-containing protein 19
3swm_B	1e-29	19	152	20	147	NAC domain-containing protein 19
3swm_C	1e-29	19	152	20	147	NAC domain-containing protein 19
3swm_D	1e-29	19	152	20	147	NAC domain-containing protein 19
3swp_A	1e-29	19	152	20	147	NAC domain-containing protein 19
3swp_B	1e-29	19	152	20	147	NAC domain-containing protein 19
3swp_C	1e-29	19	152	20	147	NAC domain-containing protein 19
3swp_D	1e-29	19	152	20	147	NAC domain-containing protein 19
3ulx_A	1e-29	19	149	15	139	Stress-induced transcription factor NAC1
4dul_A	1e-29	19	152	17	144	NAC domain-containing protein 19
4dul_B	1e-29	19	152	17	144	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cagra.2192s0006.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AL138641	4e-45	AL138641.2 Arabidopsis thaliana DNA chromosome 3, BAC clone T22K7.
GenBank	CP002686	4e-45	CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006291704.2	1e-163	putative NAC domain-containing protein 61
Swissprot	Q9M290	1e-145	NAC61_ARATH; Putative NAC domain-containing protein 61
TrEMBL	R0FPZ0	1e-171	R0FPZ0_9BRAS; Uncharacterized protein
STRING	Cagra.2192s0006.1.p	0.0	(Capsella grandiflora)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1445	28	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G44350.1	1e-138	NAC domain containing protein 61

Link Out ? help Back to Top
Phytozome	Cagra.2192s0006.1.p