PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.22230s0001.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family B3
Protein Properties Length: 149aa    MW: 16692.8 Da    PI: 7.7784
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.22230s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B378.57.1e-2537128497
                           E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE. CS
                    B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefe 91 
                           + +++++l  +rl +p++fa+e+g++++++ +++l++e+grsW+v l+ + +sg  ++++GW++F++angL +g f++F+l++r +++ 
  Cagra.22230s0001.1.p  37 ANVTPSTLLYDRLQFPRSFARENGLDTRCG-EIVLMNEKGRSWTVDLRGKSSSGIAYIKRGWRSFCHANGLSSGSFFTFRLIQRgRTR- 123
                           56788888999***************9987.****************55555555***************************974444. PP

                           .EEEEE CS
                    B3  92 lvvkvf 97 
                            v++++
  Cagra.22230s0001.1.p 124 -VLRLC 128
                           .66665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.8E-2527130IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-2232133IPR015300DNA-binding pseudobarrel domain
CDDcd100175.45E-2334129No hitNo description
PROSITE profilePS5086315.35434130IPR003340B3 DNA binding domain
SMARTSM010191.9E-2835131IPR003340B3 DNA binding domain
PfamPF023621.8E-2336129IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 149 aa     Download sequence    Send to blast
MTNIMECDVH GSVSLFSGKN SRREAESSSL DPSCFVANVT PSTLLYDRLQ FPRSFARENG  60
LDTRCGEIVL MNEKGRSWTV DLRGKSSSGI AYIKRGWRSF CHANGLSSGS FFTFRLIQRG  120
RTRVLRLCPK DTEEEEEVEE CSEAQKPI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.22230s0001.1.p
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006294430.21e-68B3 domain-containing protein REM14
SwissprotO230763e-48REM15_ARATH; Putative B3 domain-containing protein REM15
TrEMBLR0HTE73e-67R0HTE7_9BRAS; Uncharacterized protein (Fragment)
STRINGCagra.22230s0001.1.p1e-106(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20422261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00260.11e-47B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]