PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cagra.2235s0001.1.p

Organism

Capsella grandiflora

Taxonomic ID

264402

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

HD-ZIP

Protein Properties

Length: 121aa MW: 13800.4 Da PI: 6.8099

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cagra.2235s0001.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58.3	1.3e-18	53	106	2	55
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRake 55 rk+ ++t+eq + Le+ F++n++++ +++e LA++l L rq+ vWFqNrRa++ Cagra.2235s0001.1.p 53 RKKLRLTREQSRLLEDSFRQNHTLNPKQKEALAQHLMLRPRQIEVWFQNRRARY 106 78889***********************************************96 PP
2	HD-ZIP_I/II	81.4	1.3e-26	53	107	1	55
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtk 55 +kk+rl++eq++lLE+sF+++++L+p++K++la++L l+prq++vWFqnrRAR+ Cagra.2235s0001.1.p 53 RKKLRLTREQSRLLEDSFRQNHTLNPKQKEALAQHLMLRPRQIEVWFQNRRARYA 107 69***************************************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	7.1E-19	37	103	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.18E-18	39	106	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.552	49	109	IPR001356	Homeobox domain
SMART	SM00389	5.3E-14	51	113	IPR001356	Homeobox domain
CDD	cd00086	1.56E-15	52	106	No hit	No description
Pfam	PF00046	6.8E-16	53	106	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 121 aa Download sequence Send to blast
LTISVPGFSS SPPSDEGSGG GREQLKLDMN RLPSSEDGED EELSHDDGSA PPRKKLRLTR 60 EQSRLLEDSF RQNHTLNPKQ KEALAQHLML RPRQIEVWFQ NRRARYAFNF LFFSFNIIGE 120 *

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cagra.2235s0001.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AJ431181	1e-128	AJ431181.1 Arabidopsis thaliana mRNA for homeodomain-leucine zipper (Athb17 gene).

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001324758.1	8e-73	homeobox-leucine zipper protein 17
Swissprot	Q8S9N6	5e-67	ATB17_ARATH; Homeobox-leucine zipper protein ATHB-17
TrEMBL	A0A1P8B175	2e-71	A0A1P8B175_ARATH; Homeobox-leucine zipper protein 17
STRING	Cagra.2235s0001.1.p	1e-82	(Capsella grandiflora)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4890	27	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01430.1	2e-54	homeobox-leucine zipper protein 17

Link Out ? help Back to Top
Phytozome	Cagra.2235s0001.1.p

Publications ? help Back to Top
Zhao P, et al. ATHB17 enhances stress tolerance by coordinating photosynthesis associated nuclear gene and ATSIG5 expression in response to abiotic stress. Sci Rep, 2017. 7: p. 45492 [PMID:28358040]