PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.2235s0008.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family WOX
Protein Properties Length: 256aa    MW: 29189.3 Da    PI: 6.3656
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.2235s0008.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox69.54.2e-2260119357
                          --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
             Homeobox   3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                          +R+++t+eq+++Leel+++ +r+p++e+++++A+kl    +++ ++V++WFqN++a+e++
  Cagra.2235s0008.1.p  60 SRWNPTPEQITTLEELYKSgTRTPTTEQIQKIASKLrkygRIEGKNVFYWFQNHKARERQ 119
                          7*****************99**************************************97 PP
2Wus_type_Homeobox1178.4e-3858121265
    Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                          a++RW+PtpeQi+ LeelyksG+rtP++e+iq+i+++L++yG+ie+kNVfyWFQN+kaRerqk+
  Cagra.2235s0008.1.p  58 ASSRWNPTPEQITTLEELYKSGTRTPTTEQIQKIASKLRKYGRIEGKNVFYWFQNHKARERQKR 121
                          579***********************************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007111.64555120IPR001356Homeobox domain
SMARTSM003891.5E-557124IPR001356Homeobox domain
SuperFamilySSF466897.7E-1359122IPR009057Homeodomain-like
PfamPF000461.0E-1960119IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.9E-960119IPR009057Homeodomain-like
CDDcd000861.03E-561115No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0016049Biological Processcell growth
GO:0048314Biological Processembryo sac morphogenesis
GO:0048446Biological Processpetal morphogenesis
GO:0048482Biological Processplant ovule morphogenesis
GO:0051301Biological Processcell division
GO:0048353Cellular Componentprimary endosperm nucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MGYVSDNNLV NYMPLSTTTQ SHLLLTHCDI NGDDQPQLIP ASSGEHDDGK SNVTAAVASS  60
RWNPTPEQIT TLEELYKSGT RTPTTEQIQK IASKLRKYGR IEGKNVFYWF QNHKARERQK  120
RRRREGSSGG SRVDRTKSCL SFPYTDAQPQ HEVLVPLSYN KDNNGNNEDD GTTTEESERA  180
SEGGKDIITW RNLVTSSITD QDEPGREVET REIRTLNLFP VLENQEKTSR FKEKMMNQVC  240
CCNYCFYYEF LPLKN*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that plays a central role in ovule patterning by regulating cell proliferation of the maternal integuments and differentiation of the maegaspore mother cell (MCC). Involved in AGAMOUS (AG) repression in leaves. {ECO:0000269|PubMed:15659481}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.2235s0008.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2546041e-165AC254604.1 Capsella rubella clone CAP23-D18, complete sequence.
GenBankAC2546071e-165AC254607.1 Capsella rubella clone CAP08-M18, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006292215.11e-172WUSCHEL-related homeobox 6
SwissprotQ9ZVF51e-112WOX6_ARATH; WUSCHEL-related homeobox 6
TrEMBLR0HMG91e-171R0HMG9_9BRAS; Uncharacterized protein
STRINGCagra.2235s0008.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM133691828
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01500.11e-89WOX family protein