PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.2248s0016.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family bHLH
Protein Properties Length: 189aa    MW: 21271.8 Da    PI: 9.5728
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.2248s0016.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.64.7e-132879255
                         HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                         ++ h+e+E++RR ++ s ++ Lr+llP  +   ++K s ++ L  Av+YI +L+
  Cagra.2248s0016.1.p 28 KVVHKEVEKQRRLEMASLYASLRSLLPLEF--IQGKRSTSDQLNGAVNYIEYLE 79
                         678*************************65..********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.24E-72483No hitNo description
PROSITE profilePS5088812.6142678IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-122792IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.6E-112892IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.8E-102879IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-43284IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MNGLPEKIRR RPPSKKKLRV SCEEKMEKVV HKEVEKQRRL EMASLYASLR SLLPLEFIQG  60
KRSTSDQLNG AVNYIEYLER NIKDMSSKRD GLVLLSRRSF GSSNEQGCND DSNHVVIRPC  120
LVGVEIMFSH LQTPISSVLQ VLRERGLCVI GCISSSVNDR LIHTLQAEVK DLALIDLADL  180
KVTLTLIK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11019RPPSKKKLRV
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.2248s0016.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023635067.11e-130transcription factor bHLH118
SwissprotQ9STJ74e-89BH118_ARATH; Transcription factor bHLH118
TrEMBLR0GLV31e-106R0GLV3_9BRAS; Uncharacterized protein
STRINGCagra.2248s0016.1.p1e-134(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM44792754
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25400.18e-75bHLH family protein