PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.22718s0002.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family WRKY
Protein Properties Length: 1191aa    MW: 135456 Da    PI: 7.3238
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.22718s0002.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY75.65.9e-24247305159
                           ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                           ldDgy+WrKYG+K+v+   + r Y++C s gC+++k+ver+a+dpkvv++ Y g+Hnh+
  Cagra.22718s0002.1.p 247 LDDGYQWRKYGKKVVNVIANRRRYFKCISYGCRARKRVERAATDPKVVVTSYDGKHNHD 305
                           59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056786.4E-106185IPR008889VQ
Gene3DG3DSA:2.20.25.804.4E-28232305IPR003657WRKY domain
SuperFamilySSF1182902.75E-21239305IPR003657WRKY domain
PROSITE profilePS5081127.783242307IPR003657WRKY domain
SMARTSM007744.3E-26247306IPR003657WRKY domain
PfamPF031064.6E-19248305IPR003657WRKY domain
SuperFamilySSF522004.71E-9372487IPR000157Toll/interleukin-1 receptor homology (TIR) domain
SuperFamilySSF525404.67E-40507766IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF009312.6E-16529738IPR002182NB-ARC
Gene3DG3DSA:3.40.50.3001.0E-7542680IPR027417P-loop containing nucleoside triphosphate hydrolase
PRINTSPR003649.1E-15546561No hitNo description
PRINTSPR003649.1E-15622636No hitNo description
SuperFamilySSF467854.35E-8746845IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:3.80.10.106.7E-378691161IPR032675Leucine-rich repeat domain, L domain-like
SuperFamilySSF520582.38E-438711155IPR032675Leucine-rich repeat domain, L domain-like
PfamPF077251.4E-5930949IPR011713Leucine-rich repeat 3
PRINTSPR003649.1E-1510191035No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007165Biological Processsignal transduction
GO:0009941Cellular Componentchloroplast envelope
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0043531Molecular FunctionADP binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1191 aa     Download sequence    Send to blast
MQFFLFKSMM SKQKSQKRQL EIRGSRPSPL IVSSHKIKKP PQHPANRELV SPYVPRVTVV  60
VSPKVVHATA SEFKNVVQRL TGISSSFFLE SGDGGDVSPA VRLSSMEKAA ESPGILSPSP  120
AMLPTAIFHQ GGMSTSGFMS PSQSPSYAKL PSTQEALFDT ELSIGFSRFE QRDAASLATK  180
IEHMSEASDS EKVSNEETSV REKDEDEPEP KRRVTEGQVL EPADVASHRT LREPRVVVQT  240
TSDVDILDDG YQWRKYGKKV VNVIANRRRY FKCISYGCRA RKRVERAATD PKVVVTSYDG  300
KHNHDLLVAK SSIHDTVIAE NSANFVSFPQ NVQDAELNIG CPRFNSLSVD EAFTDTSAFV  360
RPVNTCVPIS ASTDYDVVIM YERGDICNDD FISHLRASLC RRGISVYEEF NVVDAVPECN  420
VLIIVLTSTY VPSNLLNILD HQQTDDRVVY PIFYKLSPYD FISNKKNYER FFLQDEPSRW  480
QAALDELTQM PGYTLTDKSE SELIDEIVRD ALMVLCSKDK VNMIGMDMQV EEILSLLCIE  540
SLDVRSIGIW GTVGIGKTAI AEEIFRKISV QYETCIFLKD LHEEVKVKGH DAVREDFLSR  600
VLEVEPHVIR FSDIKTSFLR SRLQSKRVLV VLDDVNDYRD VETFLGKLTY FGPGSRIIIT  660
SRNRRVFVLC KIDHVYEVKP LNTSNSLLLL NRGTQSVLLP EVYSALSLEL VRFSNGNPQV  720
LNFLRNREWQ RLSQQIQKTS PIYIPGIYER SCCGLDDYER SIFLDIACFF RRMDKDNVAM  780
LLDGCGFSAH VGFRNLVDKS VLSMSHNLVD MHSFFQATGR EIVRQESQWP EYCSRLWNQE  840
DIVDIIIHDK GTSAIEGIFL DMSKLKFDAN PNVFEKMCNL RLLKFYCSEV IENRGVSLPQ  900
GLEYLPIRLR LLHWEYYPLS SLPRSFDPRN LVELNLPSSC AKKLWKGKKC LEKLKKIRLS  960
YSDQLTKIPR LSSAPNLELL DLEGCKSLLS LSQSISDLKK LVFLNLKDCL NLESIPSTVD  1020
LESLEVLNLS GCSMLENFPE ISPNVKELYI GGTMIQEIPS SIKNLVLLEK LDLENSKHLK  1080
SLPASICKLK NLETLNLSGC TSLDRFPDLS RRMKCLRFLD LSRTAIKELP STISYLTALE  1140
ELRFVDCRNL VRLPDNAWSQ RFKVEFRQID KEKFSRLWNK FGWLKKVQIS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-27238306876Probable WRKY transcription factor 4
2lex_A1e-27238306876Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. May act also as a disease resistance protein with a serine/threonine-protein kinase activity (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.22718s0002.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023637384.10.0probable WRKY transcription factor 19 isoform X1
RefseqXP_023637385.10.0probable WRKY transcription factor 19 isoform X1
SwissprotQ9SZ670.0WRK19_ARATH; Probable WRKY transcription factor 19
TrEMBLD7M0D50.0D7M0D5_ARALL; Predicted protein
STRINGCagra.22718s0002.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM800346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12020.30.0WRKY family protein
Publications ? help Back to Top
  1. Su SH,Krysan PJ
    A double-mutant collection targeting MAP kinase related genes in Arabidopsis for studying genetic interactions.
    Plant J., 2016. 88(5): p. 867-878
    [PMID:27490954]