PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cagra.2329s0005.1.p

Organism

Capsella grandiflora

Taxonomic ID

264402

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

Protein Properties

Length: 230aa MW: 26120.8 Da PI: 9.9358

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cagra.2329s0005.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	53.7	3.7e-17	130	218	1	97
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 f+k +++s+v+ +l lp +f+++h gk+ + +tl +e+g ++e + r+++ l++GW +F+ a++L gD++vF+l++ + f Cagra.2329s0005.1.p 130 FVKSMLQSHVSGGFWLGLPVHFCRSHLGKHDG--VITLINEEGDEYETVYLARRTG----LSGGWMGFAVAHNLAYGDTLVFELIHPTAF 213 89**********************666544..7***********555555....***********************98888 PP ..EEEEE CS B3 91 elvvkvf 97 +v + Cagra.2329s0005.1.p 214 --KVYIT 218 ..55554 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	5.69E-24	124	219	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	5.1E-19	125	219	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	3.94E-25	128	219	No hit	No description
Pfam	PF02362	2.5E-14	130	218	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	12.139	130	221	IPR003340	B3 DNA binding domain
SMART	SM01019	6.4E-25	130	221	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 230 aa Download sequence Send to blast
MVVAKQPNYE EFRLKRVEEN KKRMEALNLP KLCQNLKPTS VKTSPMKKRS IPRTPEKEMV 60 LVRRSSRLSN SSSTPVYREV DVERVQIRRR GVSKRRDLSN RVYVSEEVRD DAIARAEKFQ 120 ADLGSDYPSF VKSMLQSHVS GGFWLGLPVH FCRSHLGKHD GVITLINEEG DEYETVYLAR 180 RTGLSGGWMG FAVAHNLAYG DTLVFELIHP TAFKVYITRV ESSGESSEI*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cagra.2329s0005.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB007647	2e-40	AB007647.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MJB21.
GenBank	CP002688	2e-40	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023644176.1	1e-168	B3 domain-containing protein At5g42700
Swissprot	Q9FMZ4	1e-122	Y5270_ARATH; B3 domain-containing protein At5g42700
TrEMBL	A0A2H1ZE86	1e-128	A0A2H1ZE86_ARATH; AP2/B3-like transcriptional factor family protein
STRING	Cagra.2329s0005.1.p	1e-169	(Capsella grandiflora)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3744	27	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42700.1	1e-124	B3 family protein

Link Out ? help Back to Top
Phytozome	Cagra.2329s0005.1.p

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]