PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.23502s0003.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family B3
Protein Properties Length: 331aa    MW: 37858 Da    PI: 6.977
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.23502s0003.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B396.22.1e-3037122184
                           EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                    B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                           f+kvltpsdv+k++rlv+pk++ae++   + + ++++ l ++d++gr W+++++y+++s++yv+tkGW++Fvk+++L +gD+v F++
  Cagra.23502s0003.1.p  37 FDKVLTPSDVGKLNRLVIPKQHAENYfplEDN-QNGTVLDFQDRNGRMWRFRYSYWNSSQSYVMTKGWSRFVKDKKLTSGDTVSFHR 122
                           89*********************999**7444.46789***********************************************93 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.9E-3832122IPR015300DNA-binding pseudobarrel domain
CDDcd100171.33E-2635122No hitNo description
SuperFamilySSF1019361.28E-2935122IPR015300DNA-binding pseudobarrel domain
PfamPF023625.1E-2737122IPR003340B3 DNA binding domain
SMARTSM010196.5E-2237141IPR003340B3 DNA binding domain
PROSITE profilePS5086314.53637141IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009908Biological Processflower development
GO:0048366Biological Processleaf development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MNMSTMNSEQ ELTENGAGGS GGGNNYFYTA EMREHMFDKV LTPSDVGKLN RLVIPKQHAE  60
NYFPLEDNQN GTVLDFQDRN GRMWRFRYSY WNSSQSYVMT KGWSRFVKDK KLTSGDTVSF  120
HRGFITDDNA PERRLKIMFI DWRHRDTHNN YGFGSPPYPT ASFYPPPQYP MPLPSYRSFP  180
PFYHNQYQER EYLGYGYGRL VNGGRYYAGT PLDHHHHHQW SLGRSQPLVY ESVPVFPAAR  240
APPPPPAPPQ PPITRRLRLF GVDVEESSPY VETRGEMGVA GHSSSSPVVI GDDDQLSWRL  300
PSGEVDASTS LPMQLSDDED YKRKGKFSEY *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A2e-48331454113B3 domain-containing transcription factor NGA1
5os9_B2e-48331454113B3 domain-containing transcription factor NGA1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRegulates lateral organ growth. Functionally redundant with NGA1, NGA2 and NGA3. {ECO:0000269|PubMed:16603651}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00424DAPTransfer from AT4G01500Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.23502s0003.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006288169.10.0B3 domain-containing transcription factor NGA4
SwissprotO825951e-170NGA4_ARATH; B3 domain-containing transcription factor NGA4
TrEMBLR0FFQ70.0R0FFQ7_9BRAS; Uncharacterized protein
STRINGCagra.23502s0003.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM136511527
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01500.11e-148B3 family protein
Publications ? help Back to Top
  1. Lee BH, et al.
    The Arabidopsis thaliana NGATHA transcription factors negatively regulate cell proliferation of lateral organs.
    Plant Mol. Biol., 2015. 89(4-5): p. 529-38
    [PMID:26433582]
  2. Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL
    Active suppression of a leaf meristem orchestrates determinate leaf growth.
    Elife, 2017.
    [PMID:27710768]