PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cagra.2350s0102.1.p

Organism

Capsella grandiflora

Taxonomic ID

264402

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

Nin-like

Protein Properties

Length: 346aa MW: 40085.8 Da PI: 8.4768

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cagra.2350s0102.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	81.9	6.1e-26	216	264	4	52
RWP-RK 4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +sledlskyF l+i +A+++L+v+lTvLK++CR++GI+RWPhRkiksl Cagra.2350s0102.1.p 216 GLSLEDLSKYFCLTIVEASRNLNVGLTVLKKKCREFGIPRWPHRKIKSL 264 589********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	18.451	199	284	IPR003035	RWP-RK domain
Pfam	PF02042	2.4E-21	217	264	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 346 aa Download sequence Send to blast
MAHSLTSLAV FQSVIRKELV RSLHVYGSVE TEREFLFESQ SPYVEQEKPE PLFLSEDFRP 60 PEDISEGSVF RTWRCIFLFR FNQPLPLPRF PTLLCLSRNP KLKDIPNLAN DLKFISELTP 120 KTPSDQELCS SVESREFNQP KPLKRVFKED SVQDCEVDQP KPRKIVLKQD LNCLPDSETE 180 SESEEESENE ITEHSESDAK TEMLRTKRTP SKIVAGLSLE DLSKYFCLTI VEASRNLNVG 240 LTVLKKKCRE FGIPRWPHRK IKSLDSLIHD LQREAERQQE MSEATAMAVA KRQKKLETEK 300 KNIVEKPFME IQKETKRFRQ INFKKRHRAS RAKKNQESLV SSSST*

Sequence ? help Back to Top

Protein Sequence Length: 346 aa Download sequence Send to blast

MAHSLTSLAV FQSVIRKELV RSLHVYGSVE TEREFLFESQ SPYVEQEKPE PLFLSEDFRP  60
PEDISEGSVF RTWRCIFLFR FNQPLPLPRF PTLLCLSRNP KLKDIPNLAN DLKFISELTP  120
KTPSDQELCS SVESREFNQP KPLKRVFKED SVQDCEVDQP KPRKIVLKQD LNCLPDSETE  180
SESEEESENE ITEHSESDAK TEMLRTKRTP SKIVAGLSLE DLSKYFCLTI VEASRNLNVG  240
LTVLKKKCRE FGIPRWPHRK IKSLDSLIHD LQREAERQQE MSEATAMAVA KRQKKLETEK  300
KNIVEKPFME IQKETKRFRQ INFKKRHRAS RAKKNQESLV SSSST*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cagra.2350s0102.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AL031135	4e-64	AL031135.1 Arabidopsis thaliana DNA chromosome 4, BAC clone F8D20 (ESSAII project).
GenBank	AL161587	4e-64	AL161587.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 83.
GenBank	CP002687	4e-64	CP002687.1 Arabidopsis thaliana chromosome 4 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006284026.2	0.0	protein RKD5
Swissprot	O81791	1e-167	RKD5_ARATH; Protein RKD5
TrEMBL	R0GJ89	0.0	R0GJ89_9BRAS; Uncharacterized protein (Fragment)
STRING	Cagra.2350s0102.1.p	0.0	(Capsella grandiflora)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12049	24	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35590.1	1e-159	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	Cagra.2350s0102.1.p

Publications ? help Back to Top
Tedeschi F,Rizzo P,Rutten T,Altschmied L,Bäumlein H RWP-RK domain-containing transcription factors control cell differentiation during female gametophyte development in Arabidopsis. New Phytol., 2017. 213(4): p. 1909-1924 [PMID:27870062]