PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cagra.2420s0016.1.p

Organism

Capsella grandiflora

Taxonomic ID

264402

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

bHLH

Protein Properties

Length: 290aa MW: 32764.3 Da PI: 7.4676

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cagra.2420s0016.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	34	5.4e-11	173	217	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 n + +RR +i +++ +L +l+P+ +K+s a+iLe+A +YIk Lq Cagra.2420s0016.1.p 173 NDVVVNRRTKISDKIRTLEKLMPWE-----RKMSLAMILEEAHKYIKFLQ 217 555569****************9.....8****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	12.582	167	216	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.1E-4	171	222	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.9E-8	178	217	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	5.37E-10	178	224	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.54E-6	178	221	No hit	No description
Gene3D	G3DSA:4.10.280.10	3.8E-10	180	223	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 290 aa Download sequence Send to blast
MEIPAYEFDS LTDLPPLPQE YKPNIEYSRI SLESLPPFPP SDFAAPFSDN HHHLLDYSSL 60 SLSDSLFLDS TLSLLNRHHL AESTRLEQIF YEPTRFDHHL FPNDAAAPFL HLPDLKSIEQ 120 TTTAVEEPKT MKLFPSPSRP APLPAAKRQR KLHSSSSSTT SGSPTASSSH NANDVVVNRR 180 TKISDKIRTL EKLMPWERKM SLAMILEEAH KYIKFLQSQI ASLRWMPLES VYNTAGEVGE 240 HDLLKSLTRQ QILQVLANSP GSRNVLSTRR VCVFSYEQLL TLKAMSRNL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cagra.2420s0016.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB028622	1e-100	AB028622.1 Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone:MZN24.
GenBank	CP002686	1e-100	CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006299889.1	1e-175	transcription factor bHLH117
Swissprot	Q9LRJ4	1e-109	BH117_ARATH; Transcription factor bHLH117
TrEMBL	R0GAQ1	1e-174	R0GAQ1_9BRAS; Uncharacterized protein
STRING	Cagra.2420s0016.1.p	0.0	(Capsella grandiflora)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13399	22	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22100.1	2e-93	bHLH family protein

Link Out ? help Back to Top
Phytozome	Cagra.2420s0016.1.p

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]