PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.24541s0001.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family bZIP
Protein Properties Length: 197aa    MW: 22699.9 Da    PI: 10.7708
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.24541s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_131.24.8e-1077138162
                           XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 
                           +k+++r +rk +NR +A+rsR +K++ +e  + k  +L+ eN++Lk++l     ++++ k+e
  Cagra.24541s0001.1.p  77 DKDDRRKKRKLSNRKSAQRSRIKKQKHLEDVRSKLNQLKFENRELKNRLRYVLYHCERAKME 138
                           6899*******************************************999988888888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1702.0E-972133No hitNo description
SMARTSM003385.7E-1077141IPR004827Basic-leucine zipper domain
PfamPF001705.0E-778138IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.23179125IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.93E-881128No hitNo description
PROSITE patternPS0003608499IPR004827Basic-leucine zipper domain
CDDcd147024.59E-1187126No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MSEPVLSNHV PALETGFTPW DDASDLFSIF NSPVRPMEVN PGLDKINPTQ IQNQRYSSPG  60
FKDKPLKHTG SSGVSSDKDD RRKKRKLSNR KSAQRSRIKK QKHLEDVRSK LNQLKFENRE  120
LKNRLRYVLY HCERAKMESD GLRLEHHALH EKLLSLRQAL VMRQIQQNST CATWSSVNTT  180
VVTVQRNPSM MRDHVI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17986DRRKKRKL
280101RRKKRKLSNRKSAQRSRIKKQK
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.24541s0001.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006281700.11e-144ocs element-binding factor 1
TrEMBLR0GTW01e-143R0GTW0_9BRAS; Uncharacterized protein
STRINGCagra.24541s0001.1.p1e-145(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33382665
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49760.12e-35basic leucine-zipper 5