PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.2516s0029.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family HSF
Protein Properties Length: 147aa    MW: 16989.5 Da    PI: 9.3791
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.2516s0029.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind53.28.2e-171899102
                          HHCTGGGTTTSEESSSSSEEEES-HHHHHHH..THHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
         HSF_DNA-bind   9 iledeelkeliswsengnsfvvldeeefakk..vLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                          +++d++ +++isw +++nsfv++d+eef ++   + + F  +nf+ F+  Ln YgFk+++ +++        weF +k+F kg+ el+ +
  Cagra.2516s0029.1.p   1 MVNDPSSDSIISWGKSNNSFVIKDQEEFIRRnrKMFSRFFCRNFTEFISRLNFYGFKQMNGSSGL-------WEFGDKYFVKGRPELMVE 83 
                          89**************************76411455567789******************99987.......*****************9 PP

                          XXXXXX CS
         HSF_DNA-bind  97 ikrkks 102
                          ++++ s
  Cagra.2516s0029.1.p  84 MHKRVS 89 
                          999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467854.14E-18186IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004473.8E-16186IPR000232Heat shock factor (HSF)-type, DNA-binding
SMARTSM004155.5E-17187IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.7E-19182IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 147 aa     Download sequence    Send to blast
MVNDPSSDSI ISWGKSNNSF VIKDQEEFIR RNRKMFSRFF CRNFTEFISR LNFYGFKQMN  60
GSSGLWEFGD KYFVKGRPEL MVEMHKRVSM KRFAESSKQM EAFAKVQEGS ETSSSIHAWL  120
SINQGLFCFS FFLVIKNSVA SCLCCN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.2516s0029.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010415704.13e-50PREDICTED: heat stress transcription factor A-4c-like
TrEMBLR0G8965e-66R0G896_9BRAS; Uncharacterized protein (Fragment)
STRINGCagra.2516s0029.1.p1e-103(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50671450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G19630.13e-19HSF family protein