PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.2519s0020.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family ZF-HD
Protein Properties Length: 177aa    MW: 19761.7 Da    PI: 10.2428
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.2519s0020.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer101.27.4e-32358458
          ZF-HD_dimer  4 vrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRreve 58
                         v Y+eClkNhA+slGgha+DGCgEf+p++++  +++ +l+C ACgCHRnFHRr+++
  Cagra.2519s0020.1.p  3 VLYNECLKNHAVSLGGHALDGCGEFIPKSTTIlTDPPSLRCDACGCHRNFHRRSSS 58
                         89**************************99999********************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257747.0E-33168IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047701.0E-26357IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152325.433556IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015665.6E-32556IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466898.55E-1790156IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-2590156IPR009057Homeodomain-like
TIGRFAMsTIGR015654.3E-3099156IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MVVLYNECLK NHAVSLGGHA LDGCGEFIPK STTILTDPPS LRCDACGCHR NFHRRSSSEV  60
FSHHRSPPLK PLASTPHLLL SLSSGFSGPG DKDRSAVMKK RKRTKFTAEQ KEKMRGFAER  120
AGWKMNGWDE KWVKEFCGEV GIEKQVLKVW IHNNKYLSNV KNRDSTSSTS SMSLKL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A8e-191001551873ZF-HD homeobox family protein
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
198103KKRKRT
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.2519s0020.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0114832e-76AB011483.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MUF9.
GenBankCP0026882e-76CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006282138.11e-114zinc-finger homeodomain protein 12
SwissprotQ9FKJ91e-100ZHD12_ARATH; Zinc-finger homeodomain protein 12
TrEMBLR0F1A81e-112R0F1A8_9BRAS; Uncharacterized protein
STRINGCagra.2519s0020.1.p1e-129(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM51662549
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60480.17e-90homeobox protein 26