PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.2520s0001.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family B3
Protein Properties Length: 106aa    MW: 11901.7 Da    PI: 10.3167
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.2520s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3491.1e-15231021297
                          HTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                   B3  12 ksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                           ++ l +p  f+ +h  g  +e++  ++l++  s  +W+vk+  ++++    lt+GWk+F+ +++L++gD+vvF++dg+  f  +v+ f
  Cagra.2520s0001.1.p  23 HTH-LNIPMAFFLRHiqGTTNEGNGVVKLRSfVSDITWQVKM--DGRR----LTQGWKKFATSHDLRVGDIVVFRHDGDLLF--HVTCF 102
                          444.99*****999999666677789*****9999*******..9998....***********************8875444..66655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.4E-206104IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.96E-197104IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.63211105IPR003340B3 DNA binding domain
CDDcd100171.05E-1512102No hitNo description
SMARTSM010191.9E-1714105IPR003340B3 DNA binding domain
PfamPF023625.5E-112595IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 106 aa     Download sequence    Send to blast
MENVAASSPV NPHFFRPLLP GFHTHLNIPM AFFLRHIQGT TNEGNGVVKL RSFVSDITWQ  60
VKMDGRRLTQ GWKKFATSHD LRVGDIVVFR HDGDLLFHVT CFGPS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.2520s0001.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023641259.12e-71B3 domain-containing protein REM14
SwissprotP0DH859e-40REM10_ARATH; B3 domain-containing protein REM10
SwissprotQ9SB808e-40REM5_ARATH; B3 domain-containing protein REM5
TrEMBLR0HQH86e-72R0HQH8_9BRAS; Uncharacterized protein
STRINGCagra.2520s0001.1.p1e-72(Capsella grandiflora)
STRINGXP_006299101.11e-72(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20422261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31640.13e-42B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]