PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cagra.2539s0002.1.p

Organism

Capsella grandiflora

Taxonomic ID

264402

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

bHLH

Protein Properties

Length: 282aa MW: 31993.6 Da PI: 6.1726

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cagra.2539s0002.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	57.6	2.3e-18	34	85	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h+e E+rRR++iN++f+ L +++P++ ++++K +Ka+ L +++eYI+ Lq Cagra.2539s0002.1.p 34 RSKHSETEQRRRSKINERFQSLMDIIPQN--QNDQKRDKASFLLEVIEYIHFLQ 85 899***********************6..4******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	1.5E-20	30	98	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.09E-19	30	112	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.19E-17	30	89	No hit	No description
PROSITE profile	PS50888	17.015	32	84	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	7.9E-16	34	85	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.7E-14	38	90	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006351	Biological Process	transcription, DNA-templated
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 282 aa Download sequence Send to blast
MNPDLDEQLD GDVYNNLPSR NDSSTGRRNR SSGRSKHSET EQRRRSKINE RFQSLMDIIP 60 QNQNDQKRDK ASFLLEVIEY IHFLQEKVQM YEGSPQLWCQ TPTKLIPWRN SHGSVVEIGD 120 HPQIVSSYDK VAASSGLLLD MQNSLDSDID SAVSTKILEH SPTSAVSCYV PTEPLPQFVQ 180 HDFWQPKPSC GLITCNTCRK KDFEVVLHTL TEAFKSSGVN MSETVISVQL SLRKRADREY 240 SVTAFASEDK CDRIADEEGN SPTETRSYYK DLSNSPKRIR Q*

Functional Description ? help Back to Top
Source	Description
UniProt	Positive brassinosteroid-signaling protein.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00534	DAP	Transfer from AT5G38860	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cagra.2539s0002.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AJ630499	1e-167	AJ630499.1 Arabidopsis thaliana mRNA for hypothetical protein, clone At5g38860.
GenBank	BT033131	1e-167	BT033131.1 Arabidopsis thaliana unknown protein (At5g38860) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006285112.2	0.0	transcription factor BIM3
Swissprot	Q9FMB6	1e-150	BIM3_ARATH; Transcription factor BIM3
TrEMBL	R0H0C0	1e-166	R0H0C0_9BRAS; Uncharacterized protein (Fragment)
STRING	Cagra.2539s0002.1.p	0.0	(Capsella grandiflora)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16131	11	14

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G38860.1	1e-139	BES1-interacting Myc-like protein 3

Link Out ? help Back to Top
Phytozome	Cagra.2539s0002.1.p

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]