PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.25796s0001.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family MYB
Protein Properties Length: 329aa    MW: 36617.4 Da    PI: 10.2112
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.25796s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.61.4e-081258347
                          SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
                          +W+ +Ed  + +a + +  +   +W++Ia  ++ g+t +q+++r++ +
  Cagra.25796s0001.1.p 12 SWSRDEDIAFERALAIYADEnenRWEKIALVVP-GKTKEQIIERYNVL 58
                          7****************999*************.***********976 PP
2Myb_DNA-binding41.23.8e-13118162347
                           SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                           +WT  E+ +++ + +++G+g+W++I+r++ ++Rt  q+ s+ qky
  Cagra.25796s0001.1.p 118 PWTSTEHRQFLLGLEKFGKGDWRSISRHFVLTRTSTQVASHAQKY 162
                           7*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.093863IPR017884SANT domain
SMARTSM007173.3E-10961IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.4E-61160IPR009057Homeodomain-like
SuperFamilySSF466891.15E-111167IPR009057Homeodomain-like
CDDcd001671.58E-101259No hitNo description
PfamPF002492.1E-71258IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-10109165IPR009057Homeodomain-like
PROSITE profilePS5129415.686110167IPR017930Myb domain
SuperFamilySSF466891.44E-15112167IPR009057Homeodomain-like
TIGRFAMsTIGR015574.9E-15114165IPR006447Myb domain, plants
SMARTSM007179.2E-9115165IPR001005SANT/Myb domain
CDDcd001671.44E-8118162No hitNo description
PfamPF002493.2E-10118162IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MILGENVSVG SSWSRDEDIA FERALAIYAD ENENRWEKIA LVVPGKTKEQ IIERYNVLVR  60
DVTMIESGLV PLPACFGFSE EPNHNASGQG KSALECGEYH RKTHDKSKPK QTRKRGIPWT  120
STEHRQFLLG LEKFGKGDWR SISRHFVLTR TSTQVASHAQ KYYQRLNSKN KHKNRASIHD  180
VTVAGDKPKQ RAITWQTFAS TSNNQLIQPA SQPSLDLPIH GRRNIWNTQA TQAISQPPAL  240
NHPTAYGVPT TIWNAATLQP SANFHVYGTP TISQPMVGPM LSPFGTNMNR LAQPHMTSGV  300
HFVPSYSGPS APINMGSIPY DIKPKDRS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-121073871RADIALIS
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.25796s0001.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0256333e-37AB025633.2 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MQM1.
GenBankCP0026883e-37CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
GenBankDQ0566853e-37DQ056685.1 Arabidopsis thaliana myb family transcription factor (At5g23650) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006289672.10.0transcription factor SRM1
TrEMBLR0HC280.0R0HC28_9BRAS; Uncharacterized protein
STRINGCagra.25796s0001.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM133911628
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23650.11e-140Homeodomain-like transcriptional regulator