PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.2622s0036.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family LBD
Protein Properties Length: 125aa    MW: 14391.9 Da    PI: 9.3113
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.2622s0036.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26095.55.8e-30121121100
               DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqqleq 89 
                          +Ca C ++++ C ++C  a yfpae++++++ +h+lFG+ +++++++++++ee  ++++ss+++e+ea+++dPv+Ga+g+i+kl+++++ 
  Cagra.2622s0036.1.p  12 PCAMCTTKNKICRRNCKSALYFPAEKQREYESAHELFGTPTIMRMMRSADDEEeMSMLASSILMEGEAWTKDPVRGAFGIIQKLKWKIAM 101
                          7************************************************7666489********************************** PP

               DUF260  90 lkaelallkee 100
                           k  l++l+e+
  Cagra.2622s0036.1.p 102 RKIYLDELHEK 112
                          ***99999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089120.67611113IPR004883Lateral organ boundaries, LOB
PfamPF031953.5E-2512108IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 125 aa     Download sequence    Send to blast
MEGQRISVNR APCAMCTTKN KICRRNCKSA LYFPAEKQRE YESAHELFGT PTIMRMMRSA  60
DDEEEMSMLA SSILMEGEAW TKDPVRGAFG IIQKLKWKIA MRKIYLDELH EKIKAVRKET  120
KLCL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.2622s0036.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006299734.11e-86LOB domain-containing protein 9
SwissprotO821985e-47LBD9_ARATH; LOB domain-containing protein 9
TrEMBLR0GAA13e-85R0GAA1_9BRAS; Uncharacterized protein
STRINGCagra.2622s0036.1.p4e-88(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM122821432
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19820.12e-49LOB domain-containing protein 9