PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.2636s0012.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family bHLH
Protein Properties Length: 363aa    MW: 40269 Da    PI: 8.2309
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.2636s0012.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.81.7e-12294339655
                          HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +++Er RR ri +++ +L+el+P+     +k  + +++L +Av+YIk+Lq
  Cagra.2636s0012.1.p 294 SIAERVRRTRISERMRKLQELVPNM----DKQTNTSDMLDLAVDYIKDLQ 339
                          689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.9288338IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.36E-15291351IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.58E-11292341No hitNo description
Gene3DG3DSA:4.10.280.103.5E-13293350IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-9294339IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.9E-12294344IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048573Biological Processphotoperiodism, flowering
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MDSNNTHTHL YDPNHISSSS SGGLLRFRSA PSSVLASFVD DDKSGFDSDR LLSRFVGDLS  60
GSPKFDDKSP VSLTNTSVSY AAAPLPPPLP EPSSFLGLPP HYPRQSKGMM NSIGLDQFLG  120
MSNHHHTKPA ESNLLRQSSS PAGMFTNLSD QNGYGPMRNL MNYEEDGESQ SNSNGLRRHC  180
SLSSRPPSSL GMLSQIPEIS PESSFQYSHW NDPSNFIDNL TSLKRETEDD GKLFLGAQNG  240
ESGNRMQLLS HHLSLPKSSS TASDMVSVDK YLQLQDSVPC KIRAKRGCAT HPRSIAERVR  300
RTRISERMRK LQELVPNMDK QTNTSDMLDL AVDYIKDLQR QYKILNENRA NCKCMNKEKK  360
SI*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00308DAPTransfer from AT2G42280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.2636s0012.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2289810.0AK228981.1 Arabidopsis thaliana mRNA for putative bHLH transcription factor, complete cds, clone: RAFL16-28-L05.
GenBankBT0153390.0BT015339.1 Arabidopsis thaliana At2g42280 gene, complete cds.
GenBankBT0157120.0BT015712.1 Arabidopsis thaliana At2g42280 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006294481.10.0transcription factor bHLH130
SwissprotQ66GR30.0BH130_ARATH; Transcription factor bHLH130
TrEMBLR0HCX70.0R0HCX7_9BRAS; Uncharacterized protein
STRINGCagra.2636s0012.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM62932745
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.10.0bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]