PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.27691s0001.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family NAC
Protein Properties Length: 208aa    MW: 23940.8 Da    PI: 9.9197
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.27691s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM180.83.4e-56211471129
                   NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                           lppGfrFhPtdeel+++yL++kv +  ++   +i evd++kvePwdLp ++k +ekewyfF+ +d+ky+tg+r+nratk+gyWkatgkd
  Cagra.27691s0001.1.p  21 LPPGFRFHPTDEELITHYLRPKVLNPFFSS-LAIGEVDLNKVEPWDLPWMAKIGEKEWYFFCVKDRKYPTGSRTNRATKAGYWKATGKD 108
                           79**********************999888.67***************888899*********************************** PP

                   NAM  90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                           k++++ +++lvg+kktLvfykgrapkg+kt+Wvmheyrle
  Cagra.27691s0001.1.p 109 KAIFK-GKTLVGMKKTLVFYKGRAPKGVKTNWVMHEYRLE 147
                           ****9.999*****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-6218171IPR003441NAC domain
PROSITE profilePS5100557.31621171IPR003441NAC domain
PfamPF023658.2E-3122146IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MDYKVSRIRE IVEEDSDKID LPPGFRFHPT DEELITHYLR PKVLNPFFSS LAIGEVDLNK  60
VEPWDLPWMA KIGEKEWYFF CVKDRKYPTG SRTNRATKAG YWKATGKDKA IFKGKTLVGM  120
KKTLVFYKGR APKGVKTNWV MHEYRLEGEF AIDDLPKTAK NECVISRVFH KRADGTKMHI  180
SGLMFGSGVN KFEPVGLPPL MDSSLYLK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-511817714171NO APICAL MERISTEM PROTEIN
1ut4_B4e-511817714171NO APICAL MERISTEM PROTEIN
1ut7_A4e-511817714171NO APICAL MERISTEM PROTEIN
1ut7_B4e-511817714171NO APICAL MERISTEM PROTEIN
3swm_A4e-511817717174NAC domain-containing protein 19
3swm_B4e-511817717174NAC domain-containing protein 19
3swm_C4e-511817717174NAC domain-containing protein 19
3swm_D4e-511817717174NAC domain-containing protein 19
3swp_A4e-511817717174NAC domain-containing protein 19
3swp_B4e-511817717174NAC domain-containing protein 19
3swp_C4e-511817717174NAC domain-containing protein 19
3swp_D4e-511817717174NAC domain-containing protein 19
4dul_A4e-511817714171NAC domain-containing protein 19
4dul_B4e-511817714171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to DNA in promoters of target genes on a specific bipartite motif 5'-[AG]CGT[AG](4-5n)[AG][CT]ACGCAA-3' (PubMed:16359384, PubMed:21303842). Triggers the expression of senescence-associated genes during age-, salt- and dark-induced senescence through a regulatory network that may involve cross-talk with salt- and H(2)O(2)-dependent signaling pathways (PubMed:21303842). {ECO:0000269|PubMed:16359384, ECO:0000269|PubMed:21303842}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.27691s0001.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Rapidly and strongly induced by H(2)O(2) treatment in both leaves and roots. Accumulates during senescence and in response to wounding. {ECO:0000269|PubMed:21303842}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0626381e-170AY062638.1 Arabidopsis thaliana Unknown protein (MRI12.1) mRNA, complete cds.
GenBankBT0087161e-170BT008716.1 Arabidopsis thaliana At3g29035 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006291582.11e-150NAC domain-containing protein 59
SwissprotQ9LJW31e-123NAC59_ARATH; NAC domain-containing protein 59
TrEMBLR0HH431e-149R0HH43_9BRAS; Uncharacterized protein
STRINGCagra.27691s0001.1.p1e-153(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40028174
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G29035.11e-125NAC domain containing protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Manacorda CA, et al.
    Salicylic acid determines differential senescence produced by two Turnip mosaic virus strains involving reactive oxygen species and early transcriptomic changes.
    Mol. Plant Microbe Interact., 2013. 26(12): p. 1486-98
    [PMID:23945002]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]