PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cagra.27859s0001.1.p

Organism

Capsella grandiflora

Taxonomic ID

264402

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

Protein Properties

Length: 124aa MW: 14330.5 Da PI: 6.5305

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cagra.27859s0001.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	36.7	7.4e-12	14	103	3	83
EE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS B3 3 kvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 k+lt+ dv ++grl lpk+ + + +++ +++++l + d +++rs++v l+ r+ ++ yvl++GW+ ++ +LkegD + + Cagra.27859s0001.1.p 14 KTLTRTDVDQHGRLLLPKSQVLTVlqkmnnvtQESLQNGIELEVLDmTKNRSYSVILKSRNAPNDYVLATGWSTLKHSLELKEGDNIKL 102 89****************999999888777333348899999998889*********************************9988 PP E CS B3 83 k 83 + Cagra.27859s0001.1.p 103 Y 103 7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	7.0E-13	10	105	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	2.49E-15	10	106	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	2.62E-15	11	116	No hit	No description
SMART	SM01019	6.4E-9	12	117	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.1E-8	14	104	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 124 aa Download sequence Send to blast
MENFKIDGDM IISKTLTRTD VDQHGRLLLP KSQVLTVLQK MNNVTQESLQ NGIELEVLDM 60 TKNRSYSVIL KSRNAPNDYV LATGWSTLKH SLELKEGDNI KLYWDYLNYK FIILNFEYSL 120 IPF*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cagra.27859s0001.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006296022.1	6e-66	putative B3 domain-containing protein At2g21920
Swissprot	Q9SJ07	3e-64	Y2192_ARATH; Putative B3 domain-containing protein At2g21920
TrEMBL	R0G129	1e-82	R0G129_9BRAS; Uncharacterized protein (Fragment)
STRING	Cagra.27859s0001.1.p	2e-85	(Capsella grandiflora)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15428	3	10

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08985.1	9e-15	B3 family protein

Link Out ? help Back to Top
Phytozome	Cagra.27859s0001.1.p