PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cagra.2848s0054.1.p

Organism

Capsella grandiflora

Taxonomic ID

264402

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

Protein Properties

Length: 308aa MW: 35360 Da PI: 4.9085

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cagra.2848s0054.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	63.2	4.1e-20	13	103	1	98
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrse 89 f+k++ +++ s+rlv+p+ + + + ++ ++t +l+ ++g+ W+vk +k+++ + +++GW++Fvk+ngL ++Df++F++dg+++ Cagra.2848s0054.1.p 13 FLKIF--NSHEHSKRLVIPRGYNKYYPNP--LPQTAVLKRPEGNFWTVKW--KKSQEDtISFQEGWEKFVKDNGLIDRDFLLFTYDGSRS 96 66777..56666678*****9666644..889************..777766799**********************99888 PP E..EEEEE- CS B3 90 felvvkvfr 98 f +v+++r Cagra.2848s0054.1.p 97 F--WVRIHR 103 8..999987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	9.61E-22	9	103	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.32E-18	11	103	No hit	No description
PROSITE profile	PS50863	13.733	11	105	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	6.7E-21	11	103	IPR015300	DNA-binding pseudobarrel domain
SMART	SM01019	5.3E-20	13	105	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.6E-18	13	103	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	8.63E-5	210	299	IPR015300	DNA-binding pseudobarrel domain
SMART	SM01019	0.32	215	303	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 308 aa Download sequence Send to blast
MVLENGFPPL PDFLKIFNSH EHSKRLVIPR GYNKYYPNPL PQTAVLKRPE GNFWTVKWKK 60 SQEDTISFQE GWEKFVKDNG LIDRDFLLFT YDGSRSFWVR IHRDGLPLEP STPIKIQEIS 120 DDEIDTAGGG PDRHMEEGDS HEDMIVSLSL GTSDELSDDD DDDDYDDDED TAICEFNKAS 180 GSCSKKGRVM KTRRDAVIAE SVKVETLLED PQNPFFISTS SCSRRVLVIS MQVIKDFNLK 240 FEPTIKLIDG FGELKRKVGK WKDRVVVYKW DEMYNRNKSM PGDIIICEIL RDEGDVVHTV 300 KVHFVKK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1yel_A	2e-16	13	102	11	99	At1g16640
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cagra.2848s0054.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023633151.1	0.0	B3 domain-containing protein At5g57720 isoform X2
Swissprot	Q9FHH1	1e-150	Y5772_ARATH; B3 domain-containing protein At5g57720
TrEMBL	R0EWE2	0.0	R0EWE2_9BRAS; Uncharacterized protein
STRING	Cagra.2848s0054.1.p	0.0	(Capsella grandiflora)
STRING	XP_006280599.1	0.0	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13797	17	23

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57720.1	1e-144	B3 family protein

Link Out ? help Back to Top
Phytozome	Cagra.2848s0054.1.p

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]