PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.29077s0001.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family M-type_MADS
Protein Properties Length: 126aa    MW: 14872.2 Da    PI: 10.5811
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.29077s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF61.87.7e-202772650
                          HHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE.EEEE CS
                SRF-TF  6 ksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl.yeys 50
                          + + ++ +s R ++++KKA+ELS+LCd+ev+vi+++ +g+l ++++
  Cagra.29077s0001.1.p 27 SKKTTTNLSLREQTMFKKASELSILCDVEVCVIYYGRDGELvKTWP 72
                          34455669*******************************9747887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.9E-8273IPR002100Transcription factor, MADS-box
CDDcd002665.02E-171599No hitNo description
PfamPF003193.7E-133168IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.66E-1532108IPR002100Transcription factor, MADS-box
PROSITE profilePS5006610.3583267IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 126 aa     Download sequence    Send to blast
MSTKKETKLS VRNQTCFKKP SSLSSVSKKT TTNLSLREQT MFKKASELSI LCDVEVCVIY  60
YGRDGELVKT WPEDRSKVRD MAERYSKLNE RVRRKKRTNL SQFLNKKILN DKKTSFDNKD  120
NKFYEK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.29077s0001.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006290011.15e-85agamous-like MADS-box protein AGL53
SwissprotQ7X9N27e-52AGL53_ARATH; Agamous-like MADS-box protein AGL53
TrEMBLR0H1191e-83R0H119_9BRAS; Uncharacterized protein
STRINGCagra.29077s0001.1.p8e-86(Capsella grandiflora)
STRINGXP_006290011.12e-84(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM5753944
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G27580.19e-53AGAMOUS-like 89
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]