PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.2920s0004.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family ZF-HD
Protein Properties Length: 86aa    MW: 9364.52 Da    PI: 8.6057
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.2920s0004.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer99.52.4e-312276260
          ZF-HD_dimer  2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60
                         +++rY eC+kNhAa++Gg+avDGC+Efm+s    g  +al+CaACgCHRnFHRreve+e
  Cagra.2920s0004.1.p 22 SNIRYVECQKNHAANIGGYAVDGCREFMAS----GGGDALTCAACGCHRNFHRREVETE 76
                         579**************************9....4458*****************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257743.0E-262385IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047708.0E-272473IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015664.7E-252573IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152323.9562672IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048509Biological Processregulation of meristem development
Sequence ? help Back to Top
Protein Sequence    Length: 86 aa     Download sequence    Send to blast
MKKRQVVVKQ RKSSYTTTSS SSNIRYVECQ KNHAANIGGY AVDGCREFMA SGGGDALTCA  60
ACGCHRNFHR REVETEVVCE YSPPT*
Functional Description ? help Back to Top
Source Description
UniProtInhibits zinc finger homeodomain (ZHD) transcription factors by interacting with them to prevent both their nuclear localization and their DNA-binding properties. Involved in integrating signals from multiple hormones by regulating the expression of specific genes. Promotes the formation of ectopic shoot meristems on leaf margins. {ECO:0000269|PubMed:21455630}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.2920s0004.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0118091e-102AC011809.2 Arabidopsis thaliana chromosome I BAC F6A14 genomic sequence, complete sequence.
GenBankCP0026841e-102CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankDQ2176081e-102DQ217608.1 Arabidopsis thaliana mini zinc finger 3 (MIF3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010498288.14e-58PREDICTED: mini zinc finger protein 3-like
RefseqXP_023632825.14e-58mini zinc finger protein 3
SwissprotQ2Q4936e-49MIF3_ARATH; Mini zinc finger protein 3
TrEMBLD7KH741e-52D7KH74_ARALL; Uncharacterized protein
STRINGCagra.2920s0004.1.p2e-57(Capsella grandiflora)
STRINGXP_010498288.12e-57(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM94428114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18835.15e-42mini zinc finger