PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cagra.2920s0008.1.p

Organism

Capsella grandiflora

Taxonomic ID

264402

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

WRKY

Protein Properties

Length: 536aa MW: 58957.8 Da PI: 6.8786

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cagra.2920s0008.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	94	1.1e-29	235	294	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK kg+++pr+YYrCt a +Cpv+k+v+r++ed ++++ tYeg+Hnh+ Cagra.2920s0008.1.p 235 MNDGCQWRKYGQKIAKGNPCPRAYYRCTIAaSCPVRKQVQRCSEDMSILISTYEGTHNHP 294 58*************************99**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	3.6E-31	220	296	IPR003657	WRKY domain
SuperFamily	SSF118290	1.24E-26	228	296	IPR003657	WRKY domain
PROSITE profile	PS50811	28.529	230	296	IPR003657	WRKY domain
SMART	SM00774	1.1E-34	235	295	IPR003657	WRKY domain
Pfam	PF03106	6.3E-26	236	294	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 536 aa Download sequence Send to blast
MEKEDFLKSG HGGEKNHEGM RKLDSSHDDS HEEHENTIRS KLDLTKVEME EAKEENRRLK 60 SSLSKIKKDF DILQTQYNQL MVQHEEPKHI SSKGHHQDKD KVSEREELVS LSLGRGLKSP 120 FQPSGSMKNK EEKNKDIMEE AGDDKKIDDH EKGSEQGLSV AFEYKDLSNP NEKFDHNKET 180 ISLEIGSNNK TPSENSFGFK NDEDDHHEDQ EELLPQNLVK KTRVSVRSRC ETPTMNDGCQ 240 WRKYGQKIAK GNPCPRAYYR CTIAASCPVR KQVQRCSEDM SILISTYEGT HNHPLPMSAT 300 AMASATSAAA SMLLSGTSSS SSSSVAASDL HGLNFSLSGN NINPNSKSPF LQTSSSPSSS 360 GHPTITLDLT ASSTSQQPFL SMLNRFNSPT SNVSRSNSYP STNLNFSNNT NTLQNWSGGG 420 GIHSNQYRAP YGNISTHQQS PYQSIIQTRT VGSSFDPFGR SSSSSSSHPT QSNHDHIGIK 480 NITTHQVPSL PAETIKAITT DPSFQSALAT ALSSIIGGDL KIDHKVNRSD AEKSP*

Sequence ? help Back to Top

Protein Sequence Length: 536 aa Download sequence Send to blast

MEKEDFLKSG HGGEKNHEGM RKLDSSHDDS HEEHENTIRS KLDLTKVEME EAKEENRRLK  60
SSLSKIKKDF DILQTQYNQL MVQHEEPKHI SSKGHHQDKD KVSEREELVS LSLGRGLKSP  120
FQPSGSMKNK EEKNKDIMEE AGDDKKIDDH EKGSEQGLSV AFEYKDLSNP NEKFDHNKET  180
ISLEIGSNNK TPSENSFGFK NDEDDHHEDQ EELLPQNLVK KTRVSVRSRC ETPTMNDGCQ  240
WRKYGQKIAK GNPCPRAYYR CTIAASCPVR KQVQRCSEDM SILISTYEGT HNHPLPMSAT  300
AMASATSAAA SMLLSGTSSS SSSSVAASDL HGLNFSLSGN NINPNSKSPF LQTSSSPSSS  360
GHPTITLDLT ASSTSQQPFL SMLNRFNSPT SNVSRSNSYP STNLNFSNNT NTLQNWSGGG  420
GIHSNQYRAP YGNISTHQQS PYQSIIQTRT VGSSFDPFGR SSSSSSSHPT QSNHDHIGIK  480
NITTHQVPSL PAETIKAITT DPSFQSALAT ALSSIIGGDL KIDHKVNRSD AEKSP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	6e-20	222	296	1	74	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cagra.2920s0008.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006307358.2	0.0	probable WRKY transcription factor 61
Swissprot	Q8VWV6	0.0	WRK61_ARATH; Probable WRKY transcription factor 61
TrEMBL	R0GWQ9	0.0	R0GWQ9_9BRAS; Uncharacterized protein
STRING	Cagra.2920s0008.1.p	0.0	(Capsella grandiflora)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12663	17	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18860.1	0.0	WRKY DNA-binding protein 61

Link Out ? help Back to Top
Phytozome	Cagra.2920s0008.1.p

Publications ? help Back to Top
Gao R,Liu P,Yong Y,Wong SM Genome-wide transcriptomic analysis reveals correlation between higher WRKY61 expression and reduced symptom severity in Turnip crinkle virus infected Arabidopsis thaliana. Sci Rep, 2016. 6: p. 24604 [PMID:27086702]