PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.2925s0033.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family C3H
Protein Properties Length: 250aa    MW: 28570 Da    PI: 7.4285
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.2925s0033.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.11.3e-07100119626
                          -SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   6 CrffartGtCkyGdrCkFaHg 26 
                          C+ f+  G C++Gd+C FaHg
  Cagra.2925s0033.1.p 100 CPAFRN-GACHRGDSCEFAHG 119
                          666666.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003565.0E-494120IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.42794121IPR000571Zinc finger, CCCH-type
PfamPF006425.9E-699119IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.1E-5100122IPR000571Zinc finger, CCCH-type
SMARTSM0035622129152IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MLKSVSPMAF YDIGEQQYST LGYIVSKPAI GNGGVYDLDP PIPTIDDAIY GSDEFRMYAY  60
KIKRCPRTRS HDWTECPYAH RGEKATRRDP RRYTYCAVAC PAFRNGACHR GDSCEFAHGV  120
FEYWLHPARY RTRACNAGNL CQRKVCFFAH APEQLRQSEG KHRCRYAYRP VRARGGNSNG  180
VAMRMDGEDY DTSRSPEKSG KSVGLDSNEE KVLLKCWSRM SIVDDHYEPS DFDLDLDLSH  240
FDWISELID*
Functional Description ? help Back to Top
Source Description
UniProtEmbryo-specific transcription factor required at the globular to heart stage transition in embryo development. {ECO:0000269|PubMed:9501112}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.2925s0033.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2545920.0AC254592.1 Capsella rubella clone CAP08-D18, complete sequence.
GenBankAY3507130.0AY350713.1 Capsella rubella clone BAC Cr33L6, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006286651.10.0zinc finger CCCH domain-containing protein 54
SwissprotO650361e-165C3H54_ARATH; Zinc finger CCCH domain-containing protein 54
TrEMBLQ6V5F90.0Q6V5F9_9BRAS; Zn-finger transcription factor
STRINGCagra.2925s0033.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM115272126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07500.11e-157C3H family protein