PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.2961s0026.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family bZIP
Protein Properties Length: 582aa    MW: 64216 Da    PI: 9.4629
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.2961s0026.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_129.61.5e-09402456357
                          XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57 
                          e+k+ +r+  NRe+A rs +RK  +++ Le+++ +L++e  +L  ++  l+k+ a
  Cagra.2961s0026.1.p 402 EDKKKKRLLANRESAARSKERKDSYVASLERRIMSLQSEYNSLYHTVTVLEKNKA 456
                          89*****************************************999999998765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.8E-8400464IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.852402465IPR004827Basic-leucine zipper domain
PfamPF001703.7E-8402456IPR004827Basic-leucine zipper domain
SuperFamilySSF579598.84E-9404454No hitNo description
Gene3DG3DSA:1.20.5.1703.7E-9404461No hitNo description
CDDcd147032.02E-17405456No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 582 aa     Download sequence    Send to blast
MNGQGNMAPL SIQYQNPFRN NDDDAGKRTD VSKYRQVPPV SRYPAGSPHF SPGPRFTQSS  60
PSFSYIPQTS PSSTTSFHTS LAHVYRPSPS SFRPPVCPSP SSYRSLVCPS QFGRGSFPHS  120
NPKPQLETQL MPVISSAPPP PSPIYYSNMS VSQPAPVYSS VPSSPMSSSI LSMTQPSPVL  180
SNFPSSTEYY LSYPSVSNMA PVFSSSPSSP IYSSNMPVTQ SKPVFSSLLS SPDNSSYSLM  240
NQSNHVPTSL TLSPVDYSGS QPGYVSSSIP SSHVHSSMLS SPSLACGEPL LPRYPTPPSS  300
HVDNRVSNMR FSQNPSPLPP LVPVRKFKTG PTTISGVKRR AGKEIDPRTR HYQNVPMDSC  360
FNDMIKTSLS PGVNFPVDGN GGYSSSKSKT YAQSIREIES HEDKKKKRLL ANRESAARSK  420
ERKDSYVASL ERRIMSLQSE YNSLYHTVTV LEKNKAMTMQ EIKQMQLRIQ YLEGMKLIRD  480
EISMLKGEST LSGQESVDAQ RLKEAIVVNQ QMSAEIERLK LAAVKVNQVV PNDHDDQCEG  540
SNMQPPDPNM VQQLNVNQFN QFNQFNQFNQ SEPNFDFDGR T*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.2961s0026.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006296262.20.0vegetative cell wall protein gp1
TrEMBLR0HUS20.0R0HUS2_9BRAS; Uncharacterized protein (Fragment)
STRINGCagra.2961s0026.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM3356822
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G12940.12e-32bZIP family protein