PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.2961s0028.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family BBR-BPC
Protein Properties Length: 295aa    MW: 33062.5 Da    PI: 9.8317
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.2961s0028.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind338.22.1e-10312941301
            GAGA_bind   1 mdddgsre..rnkg.yye................paaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaern 71 
                          m++ g+++  r+k+ y +                ++++l   +++++ms++aerda+++ern+a+s+kk+ava+rd+a++qrdkal+er+
  Cagra.2961s0028.1.p   1 MENGGQYDngRFKPdYLKgaqsmwnmmpqhqikeQHNALV--MNKKIMSILAERDAAVHERNQAVSAKKEAVAARDEALQQRDKALSERD 88 
                          8889998888999967779999999998777754446666..99********************************************** PP

            GAGA_bind  72 kalverdnkllalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpke 161
                          kal+erdn+++al+++ensl++a       lsg k +d          +d++++ +e++kl ++p+++ ++e++++k +k+++    + +
  Cagra.2961s0028.1.p  89 KALIERDNAYAALQHHENSLNFA-------LSGGKRAD----------GDDCFG-TETHKLAVFPLSTIPPEVTNTKVNKRKK----ENK 156
                          ******************96655.......58999998..........789999.88999************99999888332....333 PP

            GAGA_bind 162 kkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrr 251
                          + + k kk +e+ +++v++++  ++s+++++s+d++ln v++De+t+PvP+C+CtG+ rqCYkWGnGGWqS+CCttt+S+yPLP+++++r
  Cagra.2961s0028.1.p 157 QGQVKLKKVGEDLNRRVAAPG--KKSRTDWDSQDVGLNLVTFDETTMPVPMCTCTGSARQCYKWGNGGWQSSCCTTTLSQYPLPQMPNKR 244
                          345578888999*********..57***************************************************************** PP

            GAGA_bind 252 gaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                          ++R++grKmS+++f++lL++LaaeGydls+pvDLkd+WA+HGtn+++ti+
  Cagra.2961s0028.1.p 245 HSRMGGRKMSGNVFSRLLSRLAAEGYDLSCPVDLKDYWARHGTNRYITIK 294
                          *************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012261.2E-1661294IPR010409GAGA-binding transcriptional activator
PfamPF062171.2E-9413294IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0050793Biological Processregulation of developmental process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MENGGQYDNG RFKPDYLKGA QSMWNMMPQH QIKEQHNALV MNKKIMSILA ERDAAVHERN  60
QAVSAKKEAV AARDEALQQR DKALSERDKA LIERDNAYAA LQHHENSLNF ALSGGKRADG  120
DDCFGTETHK LAVFPLSTIP PEVTNTKVNK RKKENKQGQV KLKKVGEDLN RRVAAPGKKS  180
RTDWDSQDVG LNLVTFDETT MPVPMCTCTG SARQCYKWGN GGWQSSCCTT TLSQYPLPQM  240
PNKRHSRMGG RKMSGNVFSR LLSRLAAEGY DLSCPVDLKD YWARHGTNRY ITIK*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.2961s0028.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2290900.0AK229090.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL16-37-J01.
GenBankAK3171650.0AK317165.1 Arabidopsis thaliana AT2G21240 mRNA, complete cds, clone: RAFL21-54-A06.
GenBankAY0845540.0AY084554.1 Arabidopsis thaliana clone 111536 mRNA, complete sequence.
GenBankBT0261090.0BT026109.1 Arabidopsis thaliana At2g21240 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006294544.10.0protein BASIC PENTACYSTEINE4
RefseqXP_023639537.10.0protein BASIC PENTACYSTEINE4
SwissprotQ8S8C60.0BPC4_ARATH; Protein BASIC PENTACYSTEINE4
TrEMBLR0HTS80.0R0HTS8_9BRAS; Uncharacterized protein (Fragment)
STRINGXP_006294545.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40902659
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G21240.20.0basic pentacysteine 4