PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cagra.2961s0042.1.p

Organism

Capsella grandiflora

Taxonomic ID

264402

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

SRS

Protein Properties

Length: 175aa MW: 19989.8 Da PI: 9.4156

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cagra.2961s0042.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	95.2	1.4e-29	6	60	5	59
DUF702 5 tasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaa 59 + +C+dCGnqakk+C+++RCRtCCks++f+C+th+kstWvpa++r+++q q++ + Cagra.2961s0042.1.p 6 GRRCEDCGNQAKKECVYMRCRTCCKSKAFHCQTHIKSTWVPAYRRSHHQPQQQPQ 60 569*********************************************8777654 PP
2	DUF702	76.1	9.7e-24	67	126	95	154
DUF702 95 eskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 + + +++ ++P+ev+ +a fr v+vss+ dg+e++aYqt+v+igGh+f+GiL+dqGl++ Cagra.2961s0042.1.p 67 SVQIRTTQGHFPAEVNFPADFRGVKVSSIHDGKEQYAYQTTVNIGGHIFRGILHDQGLDK 126 3445566677***********************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	1.2E-24	6	58	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	1.8E-28	9	50	IPR006510	Zinc finger, lateral root primordium type 1
Pfam	PF05142	5.3E-21	67	125	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01624	1.9E-26	76	124	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 175 aa Download sequence Send to blast
MMMIMGRRCE DCGNQAKKEC VYMRCRTCCK SKAFHCQTHI KSTWVPAYRR SHHQPQQQPQ 60 PLFNTSSVQI RTTQGHFPAE VNFPADFRGV KVSSIHDGKE QYAYQTTVNI GGHIFRGILH 120 DQGLDKVMVD HHHQNNTSRS HRQETLLPPS TSSCPLMITT SPFTNFMSDT VLRR*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269\|PubMed:16740146}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cagra.2961s0042.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023640715.1	1e-113	protein SHI RELATED SEQUENCE 3
Swissprot	Q9SJT8	6e-90	SRS3_ARATH; Protein SHI RELATED SEQUENCE 3
TrEMBL	R0HHW6	1e-129	R0HHW6_9BRAS; Uncharacterized protein
STRING	Cagra.2961s0042.1.p	1e-130	(Capsella grandiflora)
STRING	XP_006296386.1	1e-130	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9188	26	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G21400.1	3e-89	SHI-related sequence3

Link Out ? help Back to Top
Phytozome	Cagra.2961s0042.1.p