PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.3135s0002.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family WRKY
Protein Properties Length: 411aa    MW: 45782.9 Da    PI: 7.1621
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.3135s0002.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY106.99.9e-34231289159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          ldDgy+WrKYGqK vk+s++prsYYrCt+ gC vkk+vers++dp++v +tYeg+H+h+
  Cagra.3135s0002.1.p 231 LDDGYRWRKYGQKAVKNSPYPRSYYRCTTVGCGVKKRVERSSDDPSIVMTTYEGQHTHP 289
                          59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.8E-34216291IPR003657WRKY domain
SuperFamilySSF1182905.23E-30224291IPR003657WRKY domain
PROSITE profilePS5081132.73226291IPR003657WRKY domain
SMARTSM007745.5E-41231290IPR003657WRKY domain
PfamPF031062.8E-27232289IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0042742Biological Processdefense response to bacterium
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MEKKIEKDLH HHHHHQQHQK EIKNTETKIE QHQEQKISPA SSNLMANLVT SSSEHHHHHH  60
NQLELAAGNL SSIFGDTSSS LPFPYSYFED HSSNNPNSFL DLLRQDHQFA SSSNSSSFSF  120
DAFPLPNNNN NNNNNPFFTD MPLPQAESSE VVNTAPTSPN STSVSSSSNE AANDNNNSIG  180
KEVTVKDQEE GDQQQEQKGT TKPQLKAKKK NQKKAREARF AFLTKSDIDN LDDGYRWRKY  240
GQKAVKNSPY PRSYYRCTTV GCGVKKRVER SSDDPSIVMT TYEGQHTHPF PMTPRGHIGM  300
LTSPILDHGA TTASSSSFSI PQPRYLLAQH HQPYNMYNNS LSMVNRSSSD GTFVNPGPSS  360
SSFPGFGYDM SQASTSTSSS IRDHGLLQDI LPSQIRSDSI NTQTNEEVKK *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-272242911077Probable WRKY transcription factor 4
2lex_A2e-272242911077Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.3135s0002.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4423970.0AF442397.1 Arabidopsis thaliana WRKY transcription factor 48 (WRKY48) mRNA, complete cds.
GenBankAY0638700.0AY063870.1 Arabidopsis thaliana unknown protein (At5g49520) mRNA, complete cds.
GenBankAY0912240.0AY091224.1 Arabidopsis thaliana unknown protein (At5g49520) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006280525.20.0probable WRKY transcription factor 48
SwissprotQ9FGZ40.0WRK48_ARATH; Probable WRKY transcription factor 48
TrEMBLR0GQF20.0R0GQF2_9BRAS; Uncharacterized protein (Fragment)
STRINGCagra.3135s0002.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56242648
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49520.11e-154WRKY DNA-binding protein 48
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]