PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.3166s0006.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family NAC
Protein Properties Length: 208aa    MW: 23548.8 Da    PI: 9.6665
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.3166s0006.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM109.34.6e-34151401128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                          lp G+rFhPt++el+ +yL +k+ +++l+  ++i+ +d++ ++P ++p   +++ek+ yfF+k+++ +++++r + +  +gyWk+ gk++
  Cagra.3166s0006.1.p  15 LPIGYRFHPTEQELILHYLLPKAFASPLPS-SIIPVFDLFFSHPLTFPG--DSKEKHRYFFCKKKQVSSNEHRIKTVSGDGYWKHIGKER 101
                          699*************************99.88***************4..4578999******************************** PP

                  NAM  91 evlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                          ++++  g++vg+++tL+fy  ++++++ ++t+W m ey+l
  Cagra.3166s0006.1.p 102 PIIA-CGKAVGIRRTLAFYetNKSSSNCNRTRWSMTEYSL 140
                          ****.999***********4434667778*********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.27E-409159IPR003441NAC domain
PROSITE profilePS5100537.49315160IPR003441NAC domain
PfamPF023653.2E-2016140IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MEMEKRIVVN GGMRLPIGYR FHPTEQELIL HYLLPKAFAS PLPSSIIPVF DLFFSHPLTF  60
PGDSKEKHRY FFCKKKQVSS NEHRIKTVSG DGYWKHIGKE RPIIACGKAV GIRRTLAFYE  120
TNKSSSNCNR TRWSMTEYSL AGFASAKVFG EWAVYNVYER KGSKARKQRK SRDMDDEDLS  180
CSIHFIVGSS DHETGPPPPS PPTSADE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-2111401140Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.3166s0006.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0842160.0AY084216.1 Arabidopsis thaliana clone 100085 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006288429.21e-154NAC domain-containing protein 41
TrEMBLR0FGA41e-151R0FGA4_9BRAS; Uncharacterized protein (Fragment)
STRINGCagra.3166s0006.1.p1e-154(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM78742541
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14000.11e-129NAC domain containing protein 84