PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.3262s0012.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family HSF
Protein Properties Length: 134aa    MW: 15800.2 Da    PI: 10.1517
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.3262s0012.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind56.48.2e-18131052101
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                          F  ++ye++ed++ + +isws+ +n fv++++ee  ++ +   F  s+++ F+  L+ YgF++vk++++k        eF+++ F +g+ 
  Cagra.3262s0012.1.p  13 FYVEIYELVEDPSSDPIISWSKGNNGFVLCNQEERIRNNILLKFNCSKLSEFLSELKYYGFRRVKKRSGK-------LEFRNEDFVRGQP 95 
                          8899**************************9877555555567*************************99.......************* PP

                          XXXXXXXXXX CS
         HSF_DNA-bind  92 ellekikrkk 101
                          e l+++  k+
  Cagra.3262s0012.1.p  96 ERLKEMMLKS 105
                          ****987765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.2E-319104IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.103.8E-211199IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467859.33E-2212101IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000563.7E-71336IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004477.9E-1713101IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.7E-76476IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 134 aa     Download sequence    Send to blast
MDQKYPNGLM GTFYVEIYEL VEDPSSDPII SWSKGNNGFV LCNQEERIRN NILLKFNCSK  60
LSEFLSELKY YGFRRVKKRS GKLEFRNEDF VRGQPERLKE MMLKSCRKHR AKFRAQQAAK  120
DAVDRLQLQR LQI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17379RRVKKRS
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.3262s0012.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4936856e-98AB493685.1 Arabidopsis thaliana At4g19630 mRNA for hypothetical protein, partial cds, clone: RAAt4g19630.
GenBankAY1337046e-98AY133704.1 Arabidopsis thaliana clone C103282 unknown protein (At4g19630) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010449325.28e-74PREDICTED: heat stress transcription factor A-4a-like
TrEMBLQ8L7H22e-59Q8L7H2_ARATH; Winged-helix DNA-binding transcription factor family protein
STRINGCagra.3262s0012.1.p2e-94(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50671450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G19630.13e-64HSF family protein