PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.3262s0013.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family HSF
Protein Properties Length: 127aa    MW: 14921.3 Da    PI: 10.4324
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.3262s0013.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind62.11.3e-19121032100
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                          F +k+y+++ed++ +++isw +++nsfv+++ ee+ ++ + + F  s+f+ F   L  YgFk++k+ +++        e+ ++ F +g+ 
  Cagra.3262s0013.1.p  12 FHMKIYKVVEDPSSDSVISWGKDNNSFVIWNLEELIRQNILRKFACSKFSDFRSELRYYGFKRIKKGSGE-------LEYGNEDFVRGQP 94 
                          889*****************************************************************99.......************* PP

                          XXXXXXXXX CS
         HSF_DNA-bind  92 ellekikrk 100
                          e l+++  k
  Cagra.3262s0013.1.p  95 ERLKTMMIK 103
                          ***987654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.105.5E-23897IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004158.6E-258103IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.43E-229100IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.0E-51235IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.8E-1812100IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.0E-56375IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 127 aa     Download sequence    Send to blast
MALNFPKGLS VFHMKIYKVV EDPSSDSVIS WGKDNNSFVI WNLEELIRQN ILRKFACSKF  60
SDFRSELRYY GFKRIKKGSG ELEYGNEDFV RGQPERLKTM MIKAWRKSKA KFRAREAAEE  120
MQRLQI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.3262s0013.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL0217682e-35AL021768.1 Arabidopsis thaliana DNA chromosome 4, BAC clone F24J7 (ESSA project).
GenBankAL1615512e-35AL161551.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 51.
GenBankCP0026872e-35CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010449323.19e-71PREDICTED: heat stress transcription factor A-4a-like
TrEMBLR0H2D46e-69R0H2D4_9BRAS; Uncharacterized protein
STRINGCagra.3262s0013.1.p1e-88(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50671450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G19630.11e-43HSF family protein