PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.3264s0007.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family GRAS
Protein Properties Length: 633aa    MW: 72766.3 Da    PI: 5.1836
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.3264s0007.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3466.2e-1062536292373
                 GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalklfsevsPi 90 
                          ++lL+ cA+a+s+gd++ a  lL ++++++sp gd+ qRla++f++AL+arl +s+  + ++  ++ ++ +++ s++l+a++++   sP+
  Cagra.3264s0007.1.p 253 RTLLTLCAQAISTGDKTTALDLLMQIRQQSSPIGDAGQRLAHCFANALEARLEGSTGPMIQTYyNAITSLKETASDTLKAYRVYLSSSPF 342
                          6799**************************************************7666666654777888888***************** PP

                 GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfef 178
                          +++ ++   ++Il+  + ++ +Hi+Df+i +G+QWp ++q ++ R++ p +lRiTg++ p+ g   +e++eetg+rLa+++++++vpfe+
  Cagra.3264s0007.1.p 343 VTLMYFFSFRMILDKSKDASVLHIVDFGILYGFQWPMFIQYISRRQDAPRKLRITGIELPQRGfrPTERIEETGRRLAEYCKRFNVPFEY 432
                          *************************************************************99*************************** PP

                 GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles.erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysal 267
                          ++++++++e++++e+L+++p+E+laV   ++l++l de++s e+ +rd+vLkl+++++P+v++++  + + n++ F  rf ea+++ysal
  Cagra.3264s0007.1.p 433 KAIASQHWETIRIEDLDIRPNEVLAVTAGVRLKNLQDETGSEENcPRDAVLKLIRNMNPNVFIHSIVNGSFNAPFFISRFKEAVYHYSAL 522
                          **9999**************************************99******************************************** PP

                 GRAS 268 fdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesg 356
                          fd+++++lpr++eeri  Ere+ gre++nv+ace+a+r+er et+++W+ r  +aGF++ p++ ++++  +  l+k +  + + v+e+s+
  Cagra.3264s0007.1.p 523 FDMFDSTLPRDNEERIRFEREFYGREAMNVIACEEADRVERPETYRQWQVRTVRAGFRQEPIRADMVELFRERLKKWGyHKDFVVDENSK 612
                          *****************************************************************************99999******** PP

                 GRAS 357 slvlgWkdrpLvsvSaW 373
                          +l++gWk+r+L++ S+W
  Cagra.3264s0007.1.p 613 WLLQGWKGRTLYASSCW 629
                          ***************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098560.485226609IPR005202Transcription factor GRAS
PfamPF035142.1E-103253629IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 633 aa     Download sequence    Send to blast
MDHNFSESLS GFDANPSYLS DPVEDQNTLL KYVSEILMEE SNGDYKQSMF YDSLALRKTE  60
EMFQQVIEED SQNQSFSADS IITTSCSCAG DASGSIVESV HSPDLLIGPA VDEIVVKSMF  120
SDADSALQFR KGVEEASKFL PNSDQWLINL ETERPERRDF AKEGMGLDPL RVKRSHEREV  180
IDFEEVRNSK QFATNVEDEK ITEVFDKVLL LDSECDPPTL LDGTIQDIRS NKQEGKGKKE  240
KKKKKKSQVV DFRTLLTLCA QAISTGDKTT ALDLLMQIRQ QSSPIGDAGQ RLAHCFANAL  300
EARLEGSTGP MIQTYYNAIT SLKETASDTL KAYRVYLSSS PFVTLMYFFS FRMILDKSKD  360
ASVLHIVDFG ILYGFQWPMF IQYISRRQDA PRKLRITGIE LPQRGFRPTE RIEETGRRLA  420
EYCKRFNVPF EYKAIASQHW ETIRIEDLDI RPNEVLAVTA GVRLKNLQDE TGSEENCPRD  480
AVLKLIRNMN PNVFIHSIVN GSFNAPFFIS RFKEAVYHYS ALFDMFDSTL PRDNEERIRF  540
EREFYGREAM NVIACEEADR VERPETYRQW QVRTVRAGFR QEPIRADMVE LFRERLKKWG  600
YHKDFVVDEN SKWLLQGWKG RTLYASSCWV PV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A5e-412526295374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1237245KKEKKKKKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.3264s0007.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006293832.10.0scarecrow-like protein 34 isoform X3
RefseqXP_006293833.10.0scarecrow-like protein 34 isoform X3
SwissprotP0C8840.0SCL34_ARATH; Scarecrow-like protein 34
TrEMBLR0FVU80.0R0FVU8_9BRAS; Uncharacterized protein
STRINGCagra.3264s0007.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35827189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29065.10.0GRAS family protein