PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.3346s0024.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family NF-YA
Protein Properties Length: 200aa    MW: 22312.7 Da    PI: 8.9799
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.3346s0024.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA100.31.9e-3197153158
            CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                          +ep++VNaKQy++Il+RRq+Rakle++++  +ks+kpy+heSRh hA+rRpRg+gGrF
  Cagra.3346s0024.1.p  97 EEPVFVNAKQYHGILRRRQSRAKLEARERA-IKSKKPYMHESRHLHAIRRPRGCGGRF 153
                          69***************************9.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005215.0E-3595156IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115236.62296156IPR001289Nuclear transcription factor Y subunit A
PfamPF020452.1E-2698153IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006169.8E-2499121IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860101121IPR018362CCAAT-binding factor, conserved site
PRINTSPR006169.8E-24130153IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MTSSVHELSD KNDSTGKQER SDSQSRPPAP SGRSSESVDT NSVYSEPMAH GLYPYPDPYY  60
RSVFAQQAYL PHPYPGVQLQ LMGMQQPGVP LQCDAVEEPV FVNAKQYHGI LRRRQSRAKL  120
EARERAIKSK KPYMHESRHL HAIRRPRGCG GRFLNAKKKN GDHKEEEEEE TSDENTSEAS  180
SSLRSEKLAM AASAPNGRS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A3e-2096166171NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.3346s0024.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0724140.0AY072414.1 Arabidopsis thaliana putative CCAAT-binding transcription factor subunit (At2g34720) mRNA, complete cds.
GenBankAY1147110.0AY114711.1 Arabidopsis thaliana putative CCAAT-binding transcription factor subunit (At2g34720) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006295021.11e-146nuclear transcription factor Y subunit A-4
RefseqXP_006295022.11e-146nuclear transcription factor Y subunit A-4
RefseqXP_023639853.11e-146nuclear transcription factor Y subunit A-4
SwissprotQ8VY641e-133NFYA4_ARATH; Nuclear transcription factor Y subunit A-4
TrEMBLR0HRJ31e-145R0HRJ3_9BRAS; Uncharacterized protein
STRINGCagra.3346s0024.1.p1e-146(Capsella grandiflora)
STRINGXP_006295021.11e-146(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41682756
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34720.11e-122nuclear factor Y, subunit A4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]