PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cagra.3501s0025.1.p

Organism

Capsella grandiflora

Taxonomic ID

264402

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

ZF-HD

Protein Properties

Length: 172aa MW: 20021.6 Da PI: 9.4316

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cagra.3501s0025.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	77.7	1.6e-24	3	53	2	58
ZF-HD_dimer 2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 ++++Y+eC++NhAa+lG++a+DGC E+ +s +++ CaACgCHR++HRr + Cagra.3501s0025.1.p 3 SSCVYRECMRNHAAKLGSYAIDGCLEYSQS------VTGDLCAACGCHRSYHRRVDV 53 5789**********************99......7788************865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD125774	4.0E-19	4	50	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	4.3E-18	6	51	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	3.5E-16	7	50	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	17.947	7	51	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3D	G3DSA:1.10.10.60	4.7E-17	95	168	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.97E-7	100	167	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	6.5E-31	109	168	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 172 aa Download sequence Send to blast
MQSSCVYREC MRNHAAKLGS YAIDGCLEYS QSVTGDLCAA CGCHRSYHRR VDVVSSSQIT 60 RTRFPFTSLR RVKQLARLKW KTAEERNKNA EEEEDDTEET STEEKMTVQR RAKSKFTAEQ 120 REAMKDYAAK LGWTLKDKRA IREEIRVFCE GIGVSRYHFK TWVNNNKKFY H*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00143	DAP	Transfer from AT1G14687	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cagra.3501s0025.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC006917	1e-176	AC006917.6 Genomic sequence for Arabidopsis thaliana BAC F10B6 from chromosome I, complete sequence.
GenBank	AY086523	1e-176	AY086523.1 Arabidopsis thaliana clone 25577 mRNA, complete sequence.
GenBank	BT003942	1e-176	BT003942.1 Arabidopsis thaliana clone RAFL15-16-E16 (R20740) unknown protein (At1g14687) mRNA, complete cds.
GenBank	BT005027	1e-176	BT005027.1 Arabidopsis thaliana clone U20740 unknown protein (At1g14687) mRNA, complete cds.
GenBank	CP002684	1e-176	CP002684.1 Arabidopsis thaliana chromosome 1 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006305721.1	1e-126	zinc-finger homeodomain protein 14
Swissprot	Q9LQW3	2e-97	ZHD14_ARATH; Zinc-finger homeodomain protein 14
TrEMBL	R0I8E9	1e-125	R0I8E9_9BRAS; Uncharacterized protein
STRING	Cagra.3501s0025.1.p	1e-125	(Capsella grandiflora)
STRING	XP_006305721.1	1e-125	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13728	21	24

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14687.1	1e-97	homeobox protein 32

Link Out ? help Back to Top
Phytozome	Cagra.3501s0025.1.p