PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.3641s0001.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family ARR-B
Protein Properties Length: 619aa    MW: 70619 Da    PI: 5.4953
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.3641s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like67.62.1e-21381438155
              G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilel...mkvkgLtlehvkSHLQkYRl 55 
                          ++r+ Wt++LH++F+ea++  GG++kA Pk +l++   m++kgLt++++ SHLQk+R+
  Cagra.3641s0001.1.p 381 RQRMIWTEDLHQKFLEAIDMVGGINKANPKVLLDClrgMNIKGLTRNNLSSHLQKHRI 438
                          58****************************987654449******************7 PP
2Response_reg58.73.3e-20301371108
                          EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH..HHHHESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHH CS
         Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealell..kekdpDlillDiempgmdGlellkeireeepklpiivvtahgeeedale 88 
                          +livd + + +  +r+++++ gy ev+  +d+e+al  l  +++d+++++    mpg+dGl++lk+i+++  +lp++++++ ++ e + +
  Cagra.3641s0001.1.p  30 LLIVDSNLAALIYMRNLIKRIGY-EVTIEQDAEKALSFLtnCKHDINIVIWEYHMPGIDGLQALKSIASKM-DLPVLIMSDDNQTESVMK 117
                          59*********************.***************777888**********************9866.9***************** PP

                          HHHTTESEEEESS--HHHHH CS
         Response_reg  89 alkaGakdflsKpfdpeelv 108
                          a   Ga d+++Kp+ ++ l 
  Cagra.3641s0001.1.p 118 ATLHGACDYVMKPVGEDVLA 137
                          *************9998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004481.5E-1428140IPR001789Signal transduction response regulator, receiver domain
Gene3DG3DSA:3.40.50.23002.1E-2628158No hitNo description
SuperFamilySSF521722.28E-2628155IPR011006CheY-like superfamily
PROSITE profilePS5011033.63329144IPR001789Signal transduction response regulator, receiver domain
PfamPF000723.2E-1631138IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.07E-1731143No hitNo description
Gene3DG3DSA:1.10.10.605.8E-20379442IPR009057Homeodomain-like
SuperFamilySSF466899.5E-12379441IPR009057Homeodomain-like
TIGRFAMsTIGR015572.2E-15382438IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 619 aa     Download sequence    Send to blast
MLVGNRSRDE VYTSEFTSLL LNQFPASTNL LIVDSNLAAL IYMRNLIKRI GYEVTIEQDA  60
EKALSFLTNC KHDINIVIWE YHMPGIDGLQ ALKSIASKMD LPVLIMSDDN QTESVMKATL  120
HGACDYVMKP VGEDVLANIW QHIVRKKVMS KPNITPPVQS DLAQSYGFNQ AQVGPMFVEQ  180
YQNIYQTEER AAIREWSGEI QPVQSDLVHE INVVDQHNEY FKTINQGNGE QNIERAETRP  240
GITWNGETQP VQSDLVQINV VDQRTEYFKT ICRRSIGQEN IERAATIPGM TWNGEMQPFQ  300
PDLVQMNEYL YQHNDYSQTI NQGNGQQSVA KNDEQAAKKP RVLWDAEEIQ YAPTDLVQTD  360
GFNNGNSVRN TTRRVERKKR RQRMIWTEDL HQKFLEAIDM VGGINKANPK VLLDCLRGMN  420
IKGLTRNNLS SHLQKHRIYL EENQINQQKK ETGWSTAYGA AALPQSFQGA NNVNAAISPY  480
LMNGPGPVNP IQWNQYQKRA VNPIQQNQLQ KGAVNPNQQN QFQKGAVNPN QQYQQNQQYQ  540
ENEQNQFQDG YMTMNTNPFI TNAVSHFPNL DHEIHQPQQQ QYQPSPQFNY GMSNEEPGQA  600
SDIFAPDLGL TYPSFPYM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1376382RKKRRQR
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.3641s0001.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0160415e-37AC016041.5 Genomic sequence for Arabidopsis thaliana BAC F27J15 from chromosome I, complete sequence.
GenBankCP0026845e-37CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006304445.10.0putative two-component response regulator ARR19
SwissprotQ9M9B92e-71ARR19_ARATH; Putative two-component response regulator ARR19
TrEMBLR0IK330.0R0IK33_9BRAS; Uncharacterized protein
STRINGCagra.3641s0001.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM131371629
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49190.21e-150response regulator 19