PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.3706s0004.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family bHLH
Protein Properties Length: 308aa    MW: 33296.5 Da    PI: 7.4998
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.3706s0004.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.11.2e-11245290655
                          HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +++Er RR ri  ++ +L+el+P+     +k  s a++L +Ave+Ik Lq
  Cagra.3706s0004.1.p 245 SIAERERRTRISGKLKKLQELVPNM----DKQTSYADMLDLAVEHIKGLQ 290
                          689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.075239289IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.28E-13242296IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.93E-11243294No hitNo description
Gene3DG3DSA:4.10.280.109.0E-12244294IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.9E-9245290IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-12245295IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010629Biological Processnegative regulation of gene expression
GO:0071215Biological Processcellular response to abscisic acid stimulus
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MYPPNSSKST APDGGDVDNN QYDSAAGATR DFSSFGSQTH HPPRQQQHHD PNVVGHYISG  60
EPSSVGFDSG ASSSSLFRHR SSPAGFYDQH LPTDPNGFSL GRPNGGYGGG GQGGGGGGGE  120
RGPSRLKSEL RYSGGSSSHQ EHSSLPRISE VEATAAAING VASSSMSFGN DHSNNWDNSS  180
SHISFTIDQP GKRSKNSDFF TLETQFSMPQ TSLEMARMEN LMNIPEDSVP CRVRAKRGFA  240
THPRSIAERE RRTRISGKLK KLQELVPNMD KQTSYADMLD LAVEHIKGLQ HQVEVRPYIL  300
INLCYAK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.3706s0004.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0044508e-90AC004450.3 Arabidopsis thaliana chromosome 2 clone F14B2 map CIC10F02, complete sequence.
GenBankCP0026858e-90CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006294646.10.0transcription factor bHLH129
SwissprotQ9ZW811e-156BH129_ARATH; Transcription factor bHLH129
TrEMBLR0HDD90.0R0HDD9_9BRAS; Uncharacterized protein
STRINGCagra.3706s0004.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM103291833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43140.11e-125bHLH family protein