PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cagra.3706s0015.1.p

Organism

Capsella grandiflora

Taxonomic ID

264402

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

FAR1

Protein Properties

Length: 208aa MW: 24282.5 Da PI: 8.219

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cagra.3706s0015.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	84.8	1.3e-26	38	126	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY++Y++++GF +r+ + ++s+++g+i r+f C+keg+ + + k + r++r++tr gCka+++vk +++gkw++tk+++eHnH+l+ Cagra.3706s0015.1.p 38 FYDDYSRRLGFVMRVMSCRRSEKDGRILARRFGCNKEGHCVSIRGKFGSVRKPRPSTREGCKAMIHVKYDRSGKWVITKFVKEHNHPLV 126 9************************************999999989*************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.0E-24	38	126	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 208 aa Download sequence Send to blast
MEDEEDPATK NINTTDDDFA IEPREGIEFE SEDAAKIFYD DYSRRLGFVM RVMSCRRSEK 60 DGRILARRFG CNKEGHCVSI RGKFGSVRKP RPSTREGCKA MIHVKYDRSG KWVITKFVKE 120 HNHPLVVSPR EARQTLDEKD KRIQELTIEL RNKKRLCAAY REQLDAFARI IEEHSDQIAK 180 KVENVVSNLK EFEPIEHELW RNKQDAI*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cagra.3706s0015.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT002891	0.0	BT002891.1 Arabidopsis thaliana clone RAFL14-97-G02 (R20421) unknown protein (At2g43280) mRNA, complete cds.
GenBank	BT004409	0.0	BT004409.1 Arabidopsis thaliana clone U20421 unknown protein (At2g43280) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006294998.1	1e-150	protein FAR1-RELATED SEQUENCE 5
Swissprot	Q9SZL8	2e-24	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	R0FYQ4	1e-149	R0FYQ4_9BRAS; Uncharacterized protein
STRING	Cagra.3706s0015.1.p	1e-152	(Capsella grandiflora)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3918	28	55

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43280.1	1e-141	FAR1 family protein

Link Out ? help Back to Top
Phytozome	Cagra.3706s0015.1.p

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]