PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.3744s0011.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family C2H2
Protein Properties Length: 366aa    MW: 41795.8 Da    PI: 8.7671
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.3744s0011.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.54.9e-05117140123
                          EEETTTTEEESSHHHHHHHHHH.T CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                          y C+ C+++F ++ nL +H +  H
  Cagra.3744s0011.1.p 117 YFCGVCDRRFYTNVNLINHFKQiH 140
                          78*****************98766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.10103.0E-696133IPR029060PIN domain-like
SuperFamilySSF576672.28E-5109152No hitNo description
PROSITE profilePS5015710.762117145IPR007087Zinc finger, C2H2
PROSITE patternPS000280119140IPR007087Zinc finger, C2H2
CDDcd061676.75E-14183269No hitNo description
PfamPF019361.1E-7188270IPR021139NYN domain, limkain-b1-type
Gene3DG3DSA:3.40.50.10103.0E-6202269IPR029060PIN domain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005739Cellular Componentmitochondrion
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MFSRFVQRIR SPKTQIASLS SIKGFSFSFS SINPKPQIRT GVFWDLDNKP PASFPPYDAA  60
VKLRTAASSF GFVKLMVAYA NRHAFSYVPV VVREQRTARK VLNELENTGL VKPPEPYFCG  120
VCDRRFYTNV NLINHFKQIH ETEHQKRMRQ IESSKGHQRV RLVAKYSMKI EKYKRAARKI  180
LTPKEGYGLA DELKRAGFWV KMVSDKPEAA DIALKEHMVN VMDKREVECV VLVSDDSGYA  240
DVLREAKERC LRTVVIGDLN EGALKRVADV SYSWKEVVMG KAKKEVEKVV GKWKDRDVLK  300
TLEWTYDPAL EKERGGSCGV WDYEFDYDDE EIENGTEGEP VEIGDGGDWW KIENEDCVGS  360
SRPCR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.3744s0011.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1189360.0AK118936.1 Arabidopsis thaliana At4g12240 mRNA for unknown protein, complete cds, clone: RAFL21-27-H22.
GenBankAL0803180.0AL080318.1 Arabidopsis thaliana DNA chromosome 4, BAC clone T4C9 (ESSA project).
GenBankAL1615330.0AL161533.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 33.
GenBankBT0054090.0BT005409.1 Arabidopsis thaliana clone U51152 unknown protein (At4g12240) mRNA, complete cds.
GenBankCP0026870.0CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006289872.20.0uncharacterized protein LOC17883862
TrEMBLR0HCK60.0R0HCK6_9BRAS; Uncharacterized protein (Fragment)
STRINGCagra.3744s0011.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM114442833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12240.10.0C2H2 family protein