PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.3756s0003.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family MYB_related
Protein Properties Length: 204aa    MW: 23185.1 Da    PI: 6.8933
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.3756s0003.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.35.5e-1697141347
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          +W++eE+ +++d+ k++G+g+Wk Iar+  k R++ q+ s+ qky
  Cagra.3756s0003.1.p  97 PWSAEEHSRFLDGLKKYGKGDWKNIARECVKSRSPTQVASHAQKY 141
                          8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM0071713357IPR001005SANT/Myb domain
PROSITE profilePS5129417.81490146IPR017930Myb domain
SuperFamilySSF466893.88E-1693146IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.2E-1194140IPR009057Homeodomain-like
SMARTSM007176.0E-1194144IPR001005SANT/Myb domain
TIGRFAMsTIGR015571.3E-1595145IPR006447Myb domain, plants
CDDcd001673.75E-1197142No hitNo description
PfamPF002497.2E-1297141IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MASIPVWSRY DDKQFELALK HFSQGSQDSQ ELLKKIALHI EKPYEEVKEY YLALVYDVGL  60
IESGRIAIPK YDEDYYVPLK EATESKSQVI EKAKGTPWSA EEHSRFLDGL KKYGKGDWKN  120
IARECVKSRS PTQVASHAQK YFLRQSSDSK KGKRSSIHDM TLGHTDNVTD PTGSNMSSMD  180
QQPHSVDQPP LDQYYTAAFL MIN*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00344DAPTransfer from AT3G10580Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.3756s0003.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006292614.21e-149transcription factor SRM1
TrEMBLR0FS091e-139R0FS09_9BRAS; Uncharacterized protein (Fragment)
STRINGCagra.3756s0003.1.p1e-150(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14731719
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10580.22e-78MYB_related family protein